Hb_000139_430

Information

Type transcription factor
Description TF Family: B3
Location Contig139: 441863-442851
Sequence    

Annotation

kegg
ID vvi:104882266
description uncharacterized LOC104882266
nr
ID XP_010663044.1
description PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
swissprot
ID Q5N6V0
description B3 domain-containing protein Os01g0905400 OS=Oryza sativa subsp. japonica GN=Os01g0905400 PE=2 SV=1
trembl
ID D7SHB6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g10080 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing protein os01g0905400

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10674: 441857-442089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_430 0.0 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
2 Hb_006028_020 0.1435330355 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
3 Hb_001512_050 0.1787117028 - - copine, putative [Ricinus communis]
4 Hb_027472_160 0.180200718 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
5 Hb_000212_210 0.1808087576 - - unnamed protein product [Coffea canephora]
6 Hb_007245_080 0.1813227917 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
7 Hb_002686_180 0.1819999088 - - PREDICTED: early nodulin-93-like [Populus euphratica]
8 Hb_000134_320 0.1854603223 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
9 Hb_002811_090 0.1885486555 - - 40S ribosomal protein S24A [Hevea brasiliensis]
10 Hb_132840_140 0.1896106443 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
11 Hb_001143_220 0.1941769803 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
12 Hb_178227_010 0.1947290364 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
13 Hb_000576_060 0.1952418988 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
14 Hb_002811_080 0.1975043577 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
15 Hb_009476_020 0.1989421778 - - tryptophan biosynthesis protein, putative [Ricinus communis]
16 Hb_032717_020 0.1997405587 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 isoform X1 [Jatropha curcas]
17 Hb_000352_290 0.2013395013 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
18 Hb_000735_040 0.2040827591 - - 60S ribosomal protein L32A [Hevea brasiliensis]
19 Hb_001431_080 0.205540537 - - 40S ribosomal protein S11, putative [Ricinus communis]
20 Hb_007885_010 0.2058150325 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000139_430 Hb_000139_430 Hb_006028_020 Hb_006028_020 Hb_000139_430--Hb_006028_020 Hb_001512_050 Hb_001512_050 Hb_000139_430--Hb_001512_050 Hb_027472_160 Hb_027472_160 Hb_000139_430--Hb_027472_160 Hb_000212_210 Hb_000212_210 Hb_000139_430--Hb_000212_210 Hb_007245_080 Hb_007245_080 Hb_000139_430--Hb_007245_080 Hb_002686_180 Hb_002686_180 Hb_000139_430--Hb_002686_180 Hb_002811_090 Hb_002811_090 Hb_006028_020--Hb_002811_090 Hb_006028_020--Hb_027472_160 Hb_132840_140 Hb_132840_140 Hb_006028_020--Hb_132840_140 Hb_001431_080 Hb_001431_080 Hb_006028_020--Hb_001431_080 Hb_006028_020--Hb_002686_180 Hb_001512_050--Hb_007245_080 Hb_116349_110 Hb_116349_110 Hb_001512_050--Hb_116349_110 Hb_000062_650 Hb_000062_650 Hb_001512_050--Hb_000062_650 Hb_000576_060 Hb_000576_060 Hb_001512_050--Hb_000576_060 Hb_002588_010 Hb_002588_010 Hb_001512_050--Hb_002588_010 Hb_004223_040 Hb_004223_040 Hb_001512_050--Hb_004223_040 Hb_027472_160--Hb_002811_090 Hb_003020_330 Hb_003020_330 Hb_027472_160--Hb_003020_330 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_000915_120 Hb_000915_120 Hb_027472_160--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_027472_160--Hb_000948_220 Hb_007120_090 Hb_007120_090 Hb_027472_160--Hb_007120_090 Hb_000212_210--Hb_002811_090 Hb_003057_020 Hb_003057_020 Hb_000212_210--Hb_003057_020 Hb_001789_050 Hb_001789_050 Hb_000212_210--Hb_001789_050 Hb_000212_210--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000212_210--Hb_000042_260 Hb_000272_050 Hb_000272_050 Hb_000212_210--Hb_000272_050 Hb_009476_020 Hb_009476_020 Hb_007245_080--Hb_009476_020 Hb_002235_080 Hb_002235_080 Hb_007245_080--Hb_002235_080 Hb_007245_080--Hb_001789_050 Hb_007245_080--Hb_000576_060 Hb_000735_040 Hb_000735_040 Hb_007245_080--Hb_000735_040 Hb_007245_080--Hb_007120_090 Hb_000134_320 Hb_000134_320 Hb_002686_180--Hb_000134_320 Hb_024074_010 Hb_024074_010 Hb_002686_180--Hb_024074_010 Hb_015299_030 Hb_015299_030 Hb_002686_180--Hb_015299_030 Hb_002686_180--Hb_001431_080 Hb_002686_180--Hb_132840_140 Hb_098315_020 Hb_098315_020 Hb_002686_180--Hb_098315_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.18151 0.152476 0.968256 0.505088 0.228639 0.422051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.560112 2.493 0.47431 0.374652 0

CAGE analysis