Hb_000352_200

Information

Type -
Description -
Location Contig352: 189312-196303
Sequence    

Annotation

kegg
ID pop:POPTR_0014s13630g
description POPTRDRAFT_246170; OTU-like cysteine protease family protein
nr
ID XP_012067407.1
description PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
swissprot
ID Q54P70
description OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=3 SV=2
trembl
ID A0A067L3T3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26911 PE=4 SV=1
Gene Ontology
ID GO:0008233
description otu domain-containing protein ddb_g0284757

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36570: 190959-191449 , PASA_asmbl_36573: 188577-196381 , PASA_asmbl_36574: 194384-194740 , PASA_asmbl_36575: 193088-193460 , PASA_asmbl_36576: 195564-196001 , PASA_asmbl_36578: 188577-196255 , PASA_asmbl_36580: 194889-195030 , PASA_asmbl_36581: 190169-190603 , PASA_asmbl_36582: 195175-195512
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_200 0.0 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
2 Hb_002309_050 0.1656841749 - - beta-carotene hydroxylase, putative [Ricinus communis]
3 Hb_000189_540 0.1708192714 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
4 Hb_000152_210 0.1715139692 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000155_090 0.1767253864 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
6 Hb_052764_070 0.1941588867 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
7 Hb_004787_040 0.1967666139 - - conserved hypothetical protein [Ricinus communis]
8 Hb_170426_010 0.1981193423 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
9 Hb_128486_010 0.1985774232 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
10 Hb_015807_160 0.2000984876 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
11 Hb_004931_110 0.2012121565 - - inorganic phosphate transporter, putative [Ricinus communis]
12 Hb_093458_010 0.2030036051 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
13 Hb_001767_060 0.2063693615 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_133799_010 0.2104801522 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000025_370 0.2107611575 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
16 Hb_002671_090 0.2158065112 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
17 Hb_004089_020 0.2165016761 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
18 Hb_106552_070 0.2225188685 - - conserved hypothetical protein [Ricinus communis]
19 Hb_089140_090 0.2228820205 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
20 Hb_001975_130 0.2235572336 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000352_200 Hb_000352_200 Hb_002309_050 Hb_002309_050 Hb_000352_200--Hb_002309_050 Hb_000189_540 Hb_000189_540 Hb_000352_200--Hb_000189_540 Hb_000152_210 Hb_000152_210 Hb_000352_200--Hb_000152_210 Hb_000155_090 Hb_000155_090 Hb_000352_200--Hb_000155_090 Hb_052764_070 Hb_052764_070 Hb_000352_200--Hb_052764_070 Hb_004787_040 Hb_004787_040 Hb_000352_200--Hb_004787_040 Hb_002309_050--Hb_004787_040 Hb_003680_140 Hb_003680_140 Hb_002309_050--Hb_003680_140 Hb_170426_010 Hb_170426_010 Hb_002309_050--Hb_170426_010 Hb_027654_080 Hb_027654_080 Hb_002309_050--Hb_027654_080 Hb_004089_020 Hb_004089_020 Hb_002309_050--Hb_004089_020 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_020805_060 Hb_020805_060 Hb_000189_540--Hb_020805_060 Hb_000189_540--Hb_000155_090 Hb_000189_540--Hb_000152_210 Hb_001450_030 Hb_001450_030 Hb_000152_210--Hb_001450_030 Hb_007441_170 Hb_007441_170 Hb_000152_210--Hb_007441_170 Hb_015807_160 Hb_015807_160 Hb_000152_210--Hb_015807_160 Hb_000152_210--Hb_000155_090 Hb_000155_090--Hb_007441_170 Hb_000155_090--Hb_020805_060 Hb_000011_300 Hb_000011_300 Hb_000155_090--Hb_000011_300 Hb_133799_010 Hb_133799_010 Hb_052764_070--Hb_133799_010 Hb_001767_060 Hb_001767_060 Hb_052764_070--Hb_001767_060 Hb_001307_110 Hb_001307_110 Hb_052764_070--Hb_001307_110 Hb_014508_010 Hb_014508_010 Hb_052764_070--Hb_014508_010 Hb_093458_010 Hb_093458_010 Hb_052764_070--Hb_093458_010 Hb_154038_020 Hb_154038_020 Hb_052764_070--Hb_154038_020 Hb_004787_040--Hb_170426_010 Hb_000270_740 Hb_000270_740 Hb_004787_040--Hb_000270_740 Hb_004787_040--Hb_020805_060 Hb_004679_060 Hb_004679_060 Hb_004787_040--Hb_004679_060 Hb_004787_040--Hb_000189_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09326 20.6032 64.0321 41.209 0.284373 2.48927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.97144 80.1536 25.3018 5.8751 18.0807

CAGE analysis