Hb_004787_040

Information

Type -
Description -
Location Contig4787: 52231-55454
Sequence    

Annotation

kegg
ID rcu:RCOM_1514730
description hypothetical protein
nr
ID XP_002511553.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L736
description F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2
trembl
ID B9R978
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1514730 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at1g74510-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004787_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002309_050 0.1041269873 - - beta-carotene hydroxylase, putative [Ricinus communis]
3 Hb_170426_010 0.1392533972 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
4 Hb_000270_740 0.1547649498 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
5 Hb_020805_060 0.1572360892 - - PREDICTED: protein S-acyltransferase 21 [Jatropha curcas]
6 Hb_004679_060 0.1698430448 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000189_540 0.1715381919 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
8 Hb_004089_020 0.1738148139 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
9 Hb_000120_150 0.1839330991 - - hypothetical protein JCGZ_08453 [Jatropha curcas]
10 Hb_000771_060 0.1855633516 - - PREDICTED: spermine synthase [Jatropha curcas]
11 Hb_000465_510 0.187343673 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
12 Hb_098533_020 0.1878661788 - - PREDICTED: zinc finger AN1 domain-containing stress-associated protein 12 [Jatropha curcas]
13 Hb_000768_140 0.1925967289 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
14 Hb_000352_200 0.1967666139 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
15 Hb_000815_290 0.1978105642 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
16 Hb_010506_010 0.1997134882 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
17 Hb_000057_140 0.2000255315 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
18 Hb_000031_080 0.200338436 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
19 Hb_000529_280 0.2010629476 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
20 Hb_007441_240 0.2026388098 - - ethphon-induced protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_004787_040 Hb_004787_040 Hb_002309_050 Hb_002309_050 Hb_004787_040--Hb_002309_050 Hb_170426_010 Hb_170426_010 Hb_004787_040--Hb_170426_010 Hb_000270_740 Hb_000270_740 Hb_004787_040--Hb_000270_740 Hb_020805_060 Hb_020805_060 Hb_004787_040--Hb_020805_060 Hb_004679_060 Hb_004679_060 Hb_004787_040--Hb_004679_060 Hb_000189_540 Hb_000189_540 Hb_004787_040--Hb_000189_540 Hb_003680_140 Hb_003680_140 Hb_002309_050--Hb_003680_140 Hb_000352_200 Hb_000352_200 Hb_002309_050--Hb_000352_200 Hb_002309_050--Hb_170426_010 Hb_027654_080 Hb_027654_080 Hb_002309_050--Hb_027654_080 Hb_004089_020 Hb_004089_020 Hb_002309_050--Hb_004089_020 Hb_170426_010--Hb_004679_060 Hb_170426_010--Hb_004089_020 Hb_170426_010--Hb_020805_060 Hb_170426_010--Hb_000189_540 Hb_000011_300 Hb_000011_300 Hb_170426_010--Hb_000011_300 Hb_007441_240 Hb_007441_240 Hb_000270_740--Hb_007441_240 Hb_000739_140 Hb_000739_140 Hb_000270_740--Hb_000739_140 Hb_000768_130 Hb_000768_130 Hb_000270_740--Hb_000768_130 Hb_158104_020 Hb_158104_020 Hb_000270_740--Hb_158104_020 Hb_000382_020 Hb_000382_020 Hb_000270_740--Hb_000382_020 Hb_000768_140 Hb_000768_140 Hb_020805_060--Hb_000768_140 Hb_001164_030 Hb_001164_030 Hb_020805_060--Hb_001164_030 Hb_020805_060--Hb_000011_300 Hb_020805_060--Hb_000189_540 Hb_001449_100 Hb_001449_100 Hb_004679_060--Hb_001449_100 Hb_007313_080 Hb_007313_080 Hb_004679_060--Hb_007313_080 Hb_004679_060--Hb_000189_540 Hb_004679_060--Hb_020805_060 Hb_001322_070 Hb_001322_070 Hb_000189_540--Hb_001322_070 Hb_002686_180 Hb_002686_180 Hb_000189_540--Hb_002686_180 Hb_098315_020 Hb_098315_020 Hb_000189_540--Hb_098315_020 Hb_000155_090 Hb_000155_090 Hb_000189_540--Hb_000155_090 Hb_000152_210 Hb_000152_210 Hb_000189_540--Hb_000152_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135219 1.96215 2.60074 3.08317 0.0327096 0.00829699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78554 6.47849 2.37522 1.58208 0.893635

CAGE analysis