Hb_011379_010

Information

Type -
Description -
Location Contig11379: 4819-9015
Sequence    

Annotation

kegg
ID rcu:RCOM_0190110
description Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative
nr
ID XP_002531973.1
description Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P82538
description PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1
trembl
ID B9T155
description Thylakoid lumenal 25.6 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0190110 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbp-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04125: 4851-6880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011379_010 0.0 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_007110_010 0.1581106978 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
3 Hb_014834_010 0.1599755499 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
4 Hb_004672_030 0.1885739709 - - proline oxidase [Manihot esculenta]
5 Hb_002836_120 0.2023478493 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
6 Hb_140439_010 0.2053568083 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
7 Hb_004162_260 0.211960037 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
8 Hb_002936_080 0.2157987578 - - Protein bem46, putative [Ricinus communis]
9 Hb_001045_040 0.2233593943 - - PREDICTED: carbonyl reductase [NADPH] 2 [Jatropha curcas]
10 Hb_000049_110 0.2240219302 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
11 Hb_000008_360 0.2261589651 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
12 Hb_003126_130 0.2264287512 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
13 Hb_019837_040 0.2350168192 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
14 Hb_000005_180 0.2406704056 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001488_030 0.2427576112 - - biotin carboxyl carrier protein [Vernicia fordii]
16 Hb_169116_010 0.2438113325 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
17 Hb_000740_040 0.2464436835 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
18 Hb_002157_040 0.2475577104 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
19 Hb_010812_100 0.2486192718 - - phosphate transporter [Manihot esculenta]
20 Hb_002228_080 0.2494794494 - - hypothetical protein JCGZ_12924 [Jatropha curcas]

Gene co-expression network

sample Hb_011379_010 Hb_011379_010 Hb_007110_010 Hb_007110_010 Hb_011379_010--Hb_007110_010 Hb_014834_010 Hb_014834_010 Hb_011379_010--Hb_014834_010 Hb_004672_030 Hb_004672_030 Hb_011379_010--Hb_004672_030 Hb_002836_120 Hb_002836_120 Hb_011379_010--Hb_002836_120 Hb_140439_010 Hb_140439_010 Hb_011379_010--Hb_140439_010 Hb_004162_260 Hb_004162_260 Hb_011379_010--Hb_004162_260 Hb_002228_080 Hb_002228_080 Hb_007110_010--Hb_002228_080 Hb_000107_510 Hb_000107_510 Hb_007110_010--Hb_000107_510 Hb_007110_010--Hb_004672_030 Hb_001004_150 Hb_001004_150 Hb_007110_010--Hb_001004_150 Hb_033152_120 Hb_033152_120 Hb_007110_010--Hb_033152_120 Hb_014834_010--Hb_004162_260 Hb_000914_170 Hb_000914_170 Hb_014834_010--Hb_000914_170 Hb_000676_340 Hb_000676_340 Hb_014834_010--Hb_000676_340 Hb_000049_110 Hb_000049_110 Hb_014834_010--Hb_000049_110 Hb_001045_040 Hb_001045_040 Hb_014834_010--Hb_001045_040 Hb_004128_070 Hb_004128_070 Hb_004672_030--Hb_004128_070 Hb_000525_050 Hb_000525_050 Hb_004672_030--Hb_000525_050 Hb_005846_030 Hb_005846_030 Hb_004672_030--Hb_005846_030 Hb_065525_120 Hb_065525_120 Hb_004672_030--Hb_065525_120 Hb_002936_080 Hb_002936_080 Hb_004672_030--Hb_002936_080 Hb_004346_030 Hb_004346_030 Hb_004672_030--Hb_004346_030 Hb_000005_180 Hb_000005_180 Hb_002836_120--Hb_000005_180 Hb_001488_030 Hb_001488_030 Hb_002836_120--Hb_001488_030 Hb_000008_360 Hb_000008_360 Hb_002836_120--Hb_000008_360 Hb_000390_110 Hb_000390_110 Hb_002836_120--Hb_000390_110 Hb_001329_090 Hb_001329_090 Hb_002836_120--Hb_001329_090 Hb_169116_010 Hb_169116_010 Hb_002836_120--Hb_169116_010 Hb_140439_010--Hb_002836_120 Hb_140439_010--Hb_000008_360 Hb_000331_460 Hb_000331_460 Hb_140439_010--Hb_000331_460 Hb_010812_100 Hb_010812_100 Hb_140439_010--Hb_010812_100 Hb_140439_010--Hb_000005_180 Hb_140439_010--Hb_169116_010 Hb_004162_260--Hb_002936_080 Hb_002260_030 Hb_002260_030 Hb_004162_260--Hb_002260_030 Hb_007520_010 Hb_007520_010 Hb_004162_260--Hb_007520_010 Hb_004162_260--Hb_000914_170 Hb_000935_030 Hb_000935_030 Hb_004162_260--Hb_000935_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65819 0.423749 10.3199 6.41633 0.247095 0.0377154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9738 5.67328 5.5144 0.258297 6.13454

CAGE analysis