Hb_169116_010

Information

Type -
Description -
Location Contig169116: 7680-12171
Sequence    

Annotation

kegg
ID pop:POPTR_0002s05310g
description POPTRDRAFT_830109; hypothetical protein
nr
ID XP_012092235.1
description PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
swissprot
ID Q9M1X2
description Fatty-acid-binding protein 1 OS=Arabidopsis thaliana GN=FAP1 PE=1 SV=1
trembl
ID A0A067JN54
description Chalcone-flavonone isomerase family protein OS=Jatropha curcas GN=JCGZ_21926 PE=3 SV=1
Gene Ontology
ID GO:0016872
description fatty-acid-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15740: 7331-8990 , PASA_asmbl_15741: 7736-12095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_169116_010 0.0 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
2 Hb_001488_030 0.1390133195 - - biotin carboxyl carrier protein [Vernicia fordii]
3 Hb_019837_040 0.1445150122 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
4 Hb_000005_180 0.1447628293 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000105_100 0.1466545327 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
6 Hb_000442_040 0.147352602 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
7 Hb_009851_010 0.1681024791 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
8 Hb_000676_020 0.1683939426 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
9 Hb_002836_120 0.1748064104 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
10 Hb_001329_090 0.1772750362 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000365_130 0.1792689776 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
12 Hb_000049_110 0.1798374275 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
13 Hb_000740_040 0.1808089093 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
14 Hb_009178_070 0.1827312429 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
15 Hb_160256_010 0.1827370205 - - -
16 Hb_012545_060 0.1831847055 - - PREDICTED: uncharacterized protein LOC103986927 [Musa acuminata subsp. malaccensis]
17 Hb_000122_190 0.1867725068 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
18 Hb_001250_070 0.1896740138 - - ATP-citrate synthase, putative [Ricinus communis]
19 Hb_000005_110 0.1925665226 - - histone H2B1 [Hevea brasiliensis]
20 Hb_010812_100 0.1930015003 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_169116_010 Hb_169116_010 Hb_001488_030 Hb_001488_030 Hb_169116_010--Hb_001488_030 Hb_019837_040 Hb_019837_040 Hb_169116_010--Hb_019837_040 Hb_000005_180 Hb_000005_180 Hb_169116_010--Hb_000005_180 Hb_000105_100 Hb_000105_100 Hb_169116_010--Hb_000105_100 Hb_000442_040 Hb_000442_040 Hb_169116_010--Hb_000442_040 Hb_009851_010 Hb_009851_010 Hb_169116_010--Hb_009851_010 Hb_000122_190 Hb_000122_190 Hb_001488_030--Hb_000122_190 Hb_001488_030--Hb_000005_180 Hb_000035_240 Hb_000035_240 Hb_001488_030--Hb_000035_240 Hb_001541_110 Hb_001541_110 Hb_001488_030--Hb_001541_110 Hb_000049_110 Hb_000049_110 Hb_001488_030--Hb_000049_110 Hb_001587_180 Hb_001587_180 Hb_001488_030--Hb_001587_180 Hb_019837_040--Hb_000105_100 Hb_004689_040 Hb_004689_040 Hb_019837_040--Hb_004689_040 Hb_003641_030 Hb_003641_030 Hb_019837_040--Hb_003641_030 Hb_009178_070 Hb_009178_070 Hb_019837_040--Hb_009178_070 Hb_019837_040--Hb_001488_030 Hb_002836_120 Hb_002836_120 Hb_000005_180--Hb_002836_120 Hb_001329_090 Hb_001329_090 Hb_000005_180--Hb_001329_090 Hb_003077_150 Hb_003077_150 Hb_000005_180--Hb_003077_150 Hb_000005_180--Hb_000442_040 Hb_000105_100--Hb_003641_030 Hb_000105_100--Hb_000442_040 Hb_003209_010 Hb_003209_010 Hb_000105_100--Hb_003209_010 Hb_000120_990 Hb_000120_990 Hb_000105_100--Hb_000120_990 Hb_160256_010 Hb_160256_010 Hb_000442_040--Hb_160256_010 Hb_005217_030 Hb_005217_030 Hb_000442_040--Hb_005217_030 Hb_021732_010 Hb_021732_010 Hb_000442_040--Hb_021732_010 Hb_000181_060 Hb_000181_060 Hb_000442_040--Hb_000181_060 Hb_000442_040--Hb_001488_030 Hb_000331_420 Hb_000331_420 Hb_000442_040--Hb_000331_420 Hb_027402_020 Hb_027402_020 Hb_009851_010--Hb_027402_020 Hb_000676_020 Hb_000676_020 Hb_009851_010--Hb_000676_020 Hb_009851_010--Hb_000331_420 Hb_068194_010 Hb_068194_010 Hb_009851_010--Hb_068194_010 Hb_002498_160 Hb_002498_160 Hb_009851_010--Hb_002498_160 Hb_001102_050 Hb_001102_050 Hb_009851_010--Hb_001102_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.80342 0.436391 21.0785 11.3461 1.50693 1.7119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.6846 5.07856 6.51313 2.16984 9.79738

CAGE analysis