Hb_004689_040

Information

Type -
Description -
Location Contig4689: 36947-38228
Sequence    

Annotation

kegg
ID rcu:RCOM_1104780
description hypothetical protein
nr
ID XP_012089761.1
description PREDICTED: uncharacterized protein LOC105648084 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9B3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01507 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44178: 36974-38238
cDNA
(Sanger)
(ID:Location)		 007_H23.ab1: 36974-38214 , 027_D15.ab1: 36974-38214

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004689_040 0.0 - - PREDICTED: uncharacterized protein LOC105648084 [Jatropha curcas]
2 Hb_017895_060 0.1548912237 - - PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Jatropha curcas]
3 Hb_000991_020 0.1579592882 - - amino acid transporter, putative [Ricinus communis]
4 Hb_001405_090 0.1605788132 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
5 Hb_019837_040 0.1607272526 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
6 Hb_169209_010 0.1773483705 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
7 Hb_009178_070 0.1803132557 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
8 Hb_000110_230 0.1821208847 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
9 Hb_088500_010 0.1859282174 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
10 Hb_003038_100 0.1871960769 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
11 Hb_000042_290 0.1879089526 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
12 Hb_006620_070 0.1881616832 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
13 Hb_000105_100 0.1893593717 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
14 Hb_114861_010 0.1893724013 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
15 Hb_000922_340 0.1897615087 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
16 Hb_003209_010 0.1917194683 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
17 Hb_004236_040 0.1920133457 - - biotin carboxyl carrier protein [Vernicia fordii]
18 Hb_001124_180 0.1932125269 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
19 Hb_000120_990 0.1949226831 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
20 Hb_001124_190 0.195070297 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004689_040 Hb_004689_040 Hb_017895_060 Hb_017895_060 Hb_004689_040--Hb_017895_060 Hb_000991_020 Hb_000991_020 Hb_004689_040--Hb_000991_020 Hb_001405_090 Hb_001405_090 Hb_004689_040--Hb_001405_090 Hb_019837_040 Hb_019837_040 Hb_004689_040--Hb_019837_040 Hb_169209_010 Hb_169209_010 Hb_004689_040--Hb_169209_010 Hb_009178_070 Hb_009178_070 Hb_004689_040--Hb_009178_070 Hb_082655_010 Hb_082655_010 Hb_017895_060--Hb_082655_010 Hb_000108_250 Hb_000108_250 Hb_017895_060--Hb_000108_250 Hb_017895_060--Hb_000991_020 Hb_003948_020 Hb_003948_020 Hb_017895_060--Hb_003948_020 Hb_000120_990 Hb_000120_990 Hb_017895_060--Hb_000120_990 Hb_000032_140 Hb_000032_140 Hb_000991_020--Hb_000032_140 Hb_000395_010 Hb_000395_010 Hb_000991_020--Hb_000395_010 Hb_000175_050 Hb_000175_050 Hb_000991_020--Hb_000175_050 Hb_000042_290 Hb_000042_290 Hb_000991_020--Hb_000042_290 Hb_000991_020--Hb_169209_010 Hb_001124_180 Hb_001124_180 Hb_000991_020--Hb_001124_180 Hb_006620_070 Hb_006620_070 Hb_001405_090--Hb_006620_070 Hb_004459_060 Hb_004459_060 Hb_001405_090--Hb_004459_060 Hb_000442_070 Hb_000442_070 Hb_001405_090--Hb_000442_070 Hb_007694_060 Hb_007694_060 Hb_001405_090--Hb_007694_060 Hb_011114_020 Hb_011114_020 Hb_001405_090--Hb_011114_020 Hb_000206_170 Hb_000206_170 Hb_001405_090--Hb_000206_170 Hb_000105_100 Hb_000105_100 Hb_019837_040--Hb_000105_100 Hb_169116_010 Hb_169116_010 Hb_019837_040--Hb_169116_010 Hb_003641_030 Hb_003641_030 Hb_019837_040--Hb_003641_030 Hb_019837_040--Hb_009178_070 Hb_001488_030 Hb_001488_030 Hb_019837_040--Hb_001488_030 Hb_002498_160 Hb_002498_160 Hb_169209_010--Hb_002498_160 Hb_000473_050 Hb_000473_050 Hb_169209_010--Hb_000473_050 Hb_001124_190 Hb_001124_190 Hb_169209_010--Hb_001124_190 Hb_000922_340 Hb_000922_340 Hb_169209_010--Hb_000922_340 Hb_012653_030 Hb_012653_030 Hb_169209_010--Hb_012653_030 Hb_000820_140 Hb_000820_140 Hb_169209_010--Hb_000820_140 Hb_002150_130 Hb_002150_130 Hb_009178_070--Hb_002150_130 Hb_088500_010 Hb_088500_010 Hb_009178_070--Hb_088500_010 Hb_009178_070--Hb_001124_190 Hb_003209_010 Hb_003209_010 Hb_009178_070--Hb_003209_010 Hb_005914_050 Hb_005914_050 Hb_009178_070--Hb_005914_050 Hb_009178_070--Hb_000922_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.87707 1.00766 28.1993 12.5915 0.114121 0.699437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9316 7.34833 5.21393 2.91413 37.8815

CAGE analysis