Hb_082655_010

Information

Type -
Description -
Location Contig82655: 98-762
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02760g
description POPTRDRAFT_569608, POPTRDRAFT_823227; rhodanese-like domain-containing family protein
nr
ID XP_002317801.2
description rhodanese-like domain-containing family protein [Populus trichocarpa]
swissprot
ID Q94A65
description Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1
trembl
ID B9I209
description Rhodanese-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0012s02760g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082655_010 0.0 - - rhodanese-like domain-containing family protein [Populus trichocarpa]
2 Hb_017895_060 0.1362403541 - - PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Jatropha curcas]
3 Hb_002045_090 0.1437050436 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
4 Hb_000958_120 0.15503735 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
5 Hb_005694_050 0.1613586497 - - NC domain-containing family protein [Populus trichocarpa]
6 Hb_005074_050 0.1620852427 - - PREDICTED: myosin-6-like [Jatropha curcas]
7 Hb_009545_070 0.1677745266 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
8 Hb_003640_050 0.1682623765 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_003664_030 0.1697761192 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
10 Hb_000011_560 0.1701445496 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
11 Hb_000987_100 0.170557011 - - unknown [Populus trichocarpa x Populus deltoides]
12 Hb_000169_070 0.1734141209 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
13 Hb_003397_030 0.1794659928 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
14 Hb_050514_020 0.1823989029 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
15 Hb_005217_030 0.1830111245 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
16 Hb_011476_030 0.1883610842 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
17 Hb_001711_060 0.1887735715 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
18 Hb_001198_130 0.1915918135 - - PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
19 Hb_012804_020 0.1920361969 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
20 Hb_000996_080 0.194528736 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]

Gene co-expression network

sample Hb_082655_010 Hb_082655_010 Hb_017895_060 Hb_017895_060 Hb_082655_010--Hb_017895_060 Hb_002045_090 Hb_002045_090 Hb_082655_010--Hb_002045_090 Hb_000958_120 Hb_000958_120 Hb_082655_010--Hb_000958_120 Hb_005694_050 Hb_005694_050 Hb_082655_010--Hb_005694_050 Hb_005074_050 Hb_005074_050 Hb_082655_010--Hb_005074_050 Hb_009545_070 Hb_009545_070 Hb_082655_010--Hb_009545_070 Hb_004689_040 Hb_004689_040 Hb_017895_060--Hb_004689_040 Hb_000108_250 Hb_000108_250 Hb_017895_060--Hb_000108_250 Hb_000991_020 Hb_000991_020 Hb_017895_060--Hb_000991_020 Hb_003948_020 Hb_003948_020 Hb_017895_060--Hb_003948_020 Hb_000120_990 Hb_000120_990 Hb_017895_060--Hb_000120_990 Hb_004195_140 Hb_004195_140 Hb_002045_090--Hb_004195_140 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_002045_090--Hb_000958_120 Hb_003397_030 Hb_003397_030 Hb_002045_090--Hb_003397_030 Hb_001141_050 Hb_001141_050 Hb_002045_090--Hb_001141_050 Hb_000224_080 Hb_000224_080 Hb_002045_090--Hb_000224_080 Hb_001922_110 Hb_001922_110 Hb_000958_120--Hb_001922_110 Hb_002701_070 Hb_002701_070 Hb_000958_120--Hb_002701_070 Hb_000227_400 Hb_000227_400 Hb_000958_120--Hb_000227_400 Hb_000322_030 Hb_000322_030 Hb_000958_120--Hb_000322_030 Hb_000390_210 Hb_000390_210 Hb_000958_120--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000958_120--Hb_001544_050 Hb_005694_050--Hb_002045_090 Hb_010638_010 Hb_010638_010 Hb_005694_050--Hb_010638_010 Hb_002272_220 Hb_002272_220 Hb_005694_050--Hb_002272_220 Hb_089966_010 Hb_089966_010 Hb_005694_050--Hb_089966_010 Hb_000000_180 Hb_000000_180 Hb_005694_050--Hb_000000_180 Hb_148146_010 Hb_148146_010 Hb_005074_050--Hb_148146_010 Hb_004837_210 Hb_004837_210 Hb_005074_050--Hb_004837_210 Hb_003683_030 Hb_003683_030 Hb_005074_050--Hb_003683_030 Hb_003664_030 Hb_003664_030 Hb_005074_050--Hb_003664_030 Hb_005074_050--Hb_003640_050 Hb_000056_310 Hb_000056_310 Hb_005074_050--Hb_000056_310 Hb_001047_180 Hb_001047_180 Hb_009545_070--Hb_001047_180 Hb_006583_030 Hb_006583_030 Hb_009545_070--Hb_006583_030 Hb_050514_020 Hb_050514_020 Hb_009545_070--Hb_050514_020 Hb_003680_060 Hb_003680_060 Hb_009545_070--Hb_003680_060 Hb_000302_230 Hb_000302_230 Hb_009545_070--Hb_000302_230 Hb_003470_100 Hb_003470_100 Hb_009545_070--Hb_003470_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.26918 8.81458 40.2396 11.1102 0.37729 0.902563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0891 2.43943 3.16909 1.72178 24.3591

CAGE analysis