Hb_000108_250

Information

Type -
Description -
Location Contig108: 189173-205735
Sequence    

Annotation

kegg
ID rcu:RCOM_0445980
description pheophorbide A oxygenase, putative
nr
ID XP_012067094.1
description PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID Q8W496
description Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
trembl
ID A0A067L4E1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01891 PE=4 SV=1
Gene Ontology
ID GO:0009941
description protochlorophyllide-dependent translocon component chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000108_250 0.0 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_000122_260 0.1141549216 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
3 Hb_010098_040 0.1151168057 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
4 Hb_004837_100 0.1215545044 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
5 Hb_000684_200 0.1293167738 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
6 Hb_002636_030 0.130121042 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
7 Hb_000803_170 0.1398705104 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
8 Hb_005181_120 0.1404412279 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000516_080 0.1447988616 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
10 Hb_000975_050 0.1455394861 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
11 Hb_003053_070 0.1461947628 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
12 Hb_000395_010 0.1464886122 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
13 Hb_001579_280 0.148383637 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
14 Hb_000834_060 0.1492419534 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000966_040 0.1525073173 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
16 Hb_007982_040 0.15313082 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_002894_090 0.1565509286 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
18 Hb_002811_250 0.1569074421 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
19 Hb_005731_100 0.1569727247 - - monovalent cation:proton antiporter, putative [Ricinus communis]
20 Hb_000019_080 0.1583464329 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]

Gene co-expression network

sample Hb_000108_250 Hb_000108_250 Hb_000122_260 Hb_000122_260 Hb_000108_250--Hb_000122_260 Hb_010098_040 Hb_010098_040 Hb_000108_250--Hb_010098_040 Hb_004837_100 Hb_004837_100 Hb_000108_250--Hb_004837_100 Hb_000684_200 Hb_000684_200 Hb_000108_250--Hb_000684_200 Hb_002636_030 Hb_002636_030 Hb_000108_250--Hb_002636_030 Hb_000803_170 Hb_000803_170 Hb_000108_250--Hb_000803_170 Hb_002894_090 Hb_002894_090 Hb_000122_260--Hb_002894_090 Hb_002010_110 Hb_002010_110 Hb_000122_260--Hb_002010_110 Hb_000122_260--Hb_010098_040 Hb_000975_050 Hb_000975_050 Hb_000122_260--Hb_000975_050 Hb_000966_040 Hb_000966_040 Hb_000122_260--Hb_000966_040 Hb_005181_120 Hb_005181_120 Hb_010098_040--Hb_005181_120 Hb_002811_250 Hb_002811_250 Hb_010098_040--Hb_002811_250 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_010098_040--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_010098_040--Hb_000679_080 Hb_010098_040--Hb_000684_200 Hb_000019_080 Hb_000019_080 Hb_004837_100--Hb_000019_080 Hb_003053_070 Hb_003053_070 Hb_004837_100--Hb_003053_070 Hb_004837_100--Hb_000684_200 Hb_000395_010 Hb_000395_010 Hb_004837_100--Hb_000395_010 Hb_001579_280 Hb_001579_280 Hb_004837_100--Hb_001579_280 Hb_004162_270 Hb_004162_270 Hb_004837_100--Hb_004162_270 Hb_010557_010 Hb_010557_010 Hb_000684_200--Hb_010557_010 Hb_000684_200--Hb_004162_270 Hb_000684_200--Hb_002811_250 Hb_000684_200--Hb_005181_120 Hb_091433_050 Hb_091433_050 Hb_002636_030--Hb_091433_050 Hb_003605_060 Hb_003605_060 Hb_002636_030--Hb_003605_060 Hb_000948_120 Hb_000948_120 Hb_002636_030--Hb_000948_120 Hb_000856_280 Hb_000856_280 Hb_002636_030--Hb_000856_280 Hb_074548_010 Hb_074548_010 Hb_002636_030--Hb_074548_010 Hb_002636_030--Hb_010098_040 Hb_000803_170--Hb_002811_250 Hb_000803_170--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000803_170--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_000803_170--Hb_001579_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1084 3.69731 11.4177 6.00476 0.0666743 0.177307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.54193 0.790756 2.32997 2.59414 23.4095

CAGE analysis