Hb_000991_020

Information

Type -
Description -
Location Contig991: 45218-49975
Sequence    

Annotation

kegg
ID rcu:RCOM_0451890
description amino acid transporter, putative
nr
ID XP_002531559.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID B9SZZ0
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0451890 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64770: 46563-48936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000991_020 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_000032_140 0.1199878425 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000395_010 0.1312167933 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
4 Hb_000175_050 0.135732468 - - -
5 Hb_000042_290 0.1383165972 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
6 Hb_169209_010 0.1395757606 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
7 Hb_001124_180 0.1423496804 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
8 Hb_003935_080 0.1456685991 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
9 Hb_000210_080 0.14900795 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
10 Hb_001124_190 0.1533038928 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000820_140 0.1542768384 - - histone H4 [Zea mays]
12 Hb_008179_010 0.1547136818 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
13 Hb_002374_300 0.1559869856 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
14 Hb_006153_150 0.1560900566 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
15 Hb_005489_090 0.1575114771 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
16 Hb_004689_040 0.1579592882 - - PREDICTED: uncharacterized protein LOC105648084 [Jatropha curcas]
17 Hb_001269_070 0.1605013824 - - double-stranded RNA binding protein, putative [Ricinus communis]
18 Hb_003209_010 0.1614255319 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
19 Hb_000594_100 0.1631714467 - - PREDICTED: methionine aminopeptidase 1B, chloroplastic [Jatropha curcas]
20 Hb_012545_040 0.1640973561 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000991_020 Hb_000991_020 Hb_000032_140 Hb_000032_140 Hb_000991_020--Hb_000032_140 Hb_000395_010 Hb_000395_010 Hb_000991_020--Hb_000395_010 Hb_000175_050 Hb_000175_050 Hb_000991_020--Hb_000175_050 Hb_000042_290 Hb_000042_290 Hb_000991_020--Hb_000042_290 Hb_169209_010 Hb_169209_010 Hb_000991_020--Hb_169209_010 Hb_001124_180 Hb_001124_180 Hb_000991_020--Hb_001124_180 Hb_007904_040 Hb_007904_040 Hb_000032_140--Hb_007904_040 Hb_000032_140--Hb_000042_290 Hb_000032_140--Hb_000175_050 Hb_001842_020 Hb_001842_020 Hb_000032_140--Hb_001842_020 Hb_000032_140--Hb_001124_180 Hb_000210_080 Hb_000210_080 Hb_000395_010--Hb_000210_080 Hb_000684_200 Hb_000684_200 Hb_000395_010--Hb_000684_200 Hb_004837_100 Hb_004837_100 Hb_000395_010--Hb_004837_100 Hb_004162_270 Hb_004162_270 Hb_000395_010--Hb_004162_270 Hb_000805_010 Hb_000805_010 Hb_000395_010--Hb_000805_010 Hb_158092_100 Hb_158092_100 Hb_000395_010--Hb_158092_100 Hb_011053_030 Hb_011053_030 Hb_000175_050--Hb_011053_030 Hb_000175_050--Hb_007904_040 Hb_000152_480 Hb_000152_480 Hb_000175_050--Hb_000152_480 Hb_002075_030 Hb_002075_030 Hb_000175_050--Hb_002075_030 Hb_005489_090 Hb_005489_090 Hb_000175_050--Hb_005489_090 Hb_000042_290--Hb_001124_180 Hb_002150_130 Hb_002150_130 Hb_000042_290--Hb_002150_130 Hb_000042_290--Hb_005489_090 Hb_000042_290--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_000042_290--Hb_003935_080 Hb_000176_010 Hb_000176_010 Hb_000042_290--Hb_000176_010 Hb_002498_160 Hb_002498_160 Hb_169209_010--Hb_002498_160 Hb_000473_050 Hb_000473_050 Hb_169209_010--Hb_000473_050 Hb_001124_190 Hb_001124_190 Hb_169209_010--Hb_001124_190 Hb_000922_340 Hb_000922_340 Hb_169209_010--Hb_000922_340 Hb_012653_030 Hb_012653_030 Hb_169209_010--Hb_012653_030 Hb_000820_140 Hb_000820_140 Hb_169209_010--Hb_000820_140 Hb_001124_180--Hb_005489_090 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100 Hb_001124_180--Hb_000176_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.226957 0.294603 2.76839 1.73801 0.0777634 0.0133492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.88327 0.862635 0.675855 0.583275 3.26138

CAGE analysis