Hb_000000_180

Information

Type -
Description -
Location Contig0: 327565-329885
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03900g
description 30S ribosomal protein S9
nr
ID XP_011031167.1
description PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
swissprot
ID P82278
description 30S ribosomal protein S9, chloroplastic (Fragment) OS=Spinacia oleracea GN=PRPS9 PE=1 SV=1
trembl
ID A9PB01
description 30S ribosomal protein S9 OS=Populus trichocarpa GN=POPTR_0014s03900g PE=2 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00041: 327551-329845 , PASA_asmbl_00042: 328513-328915 , PASA_asmbl_00043: 327908-329564
cDNA
(Sanger)
(ID:Location)		 008_H22.ab1: 327651-329845 , 024_A12.ab1: 327594-329824 , 047_O18.ab1: 327589-329824 , 053_L14.ab1: 327710-329803

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000000_180 0.0 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
2 Hb_012545_040 0.0768630336 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_001519_170 0.11143829 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
4 Hb_000146_030 0.1118234924 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
5 Hb_011114_020 0.1228342351 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
6 Hb_001711_060 0.1274831128 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
7 Hb_004459_060 0.1287118882 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
8 Hb_001366_350 0.1346486453 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
9 Hb_003038_100 0.1358288685 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
10 Hb_001386_090 0.1389772526 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
11 Hb_002078_120 0.1400859217 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
12 Hb_002411_100 0.1405640215 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
13 Hb_001047_180 0.1410856899 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005914_050 0.142223836 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
15 Hb_054865_010 0.1432196527 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
16 Hb_002045_090 0.145371582 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
17 Hb_002272_220 0.1465591983 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006620_070 0.1473337674 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
19 Hb_003397_030 0.1478813729 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
20 Hb_000402_020 0.1490841831 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000000_180 Hb_000000_180 Hb_012545_040 Hb_012545_040 Hb_000000_180--Hb_012545_040 Hb_001519_170 Hb_001519_170 Hb_000000_180--Hb_001519_170 Hb_000146_030 Hb_000146_030 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_001711_060 Hb_001711_060 Hb_000000_180--Hb_001711_060 Hb_004459_060 Hb_004459_060 Hb_000000_180--Hb_004459_060 Hb_012545_040--Hb_004459_060 Hb_005914_050 Hb_005914_050 Hb_012545_040--Hb_005914_050 Hb_006620_070 Hb_006620_070 Hb_012545_040--Hb_006620_070 Hb_002411_100 Hb_002411_100 Hb_012545_040--Hb_002411_100 Hb_012545_040--Hb_000146_030 Hb_001519_170--Hb_001711_060 Hb_140360_010 Hb_140360_010 Hb_001519_170--Hb_140360_010 Hb_001519_170--Hb_000146_030 Hb_001366_350 Hb_001366_350 Hb_001519_170--Hb_001366_350 Hb_001386_090 Hb_001386_090 Hb_001519_170--Hb_001386_090 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_000146_030--Hb_004459_060 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_004007_170 Hb_004007_170 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_000368_120 Hb_000368_120 Hb_011114_020--Hb_000368_120 Hb_011114_020--Hb_002411_100 Hb_000005_130 Hb_000005_130 Hb_011114_020--Hb_000005_130 Hb_000442_070 Hb_000442_070 Hb_011114_020--Hb_000442_070 Hb_011114_020--Hb_006620_070 Hb_011114_020--Hb_000146_030 Hb_001711_060--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_001711_060--Hb_003397_030 Hb_012653_030 Hb_012653_030 Hb_001711_060--Hb_012653_030 Hb_001711_060--Hb_000146_030 Hb_000438_130 Hb_000438_130 Hb_001711_060--Hb_000438_130 Hb_004459_060--Hb_006620_070 Hb_007694_060 Hb_007694_060 Hb_004459_060--Hb_007694_060 Hb_004459_060--Hb_002411_100 Hb_004459_060--Hb_000005_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.11387 7.75434 120.991 34.9777 4.34495 5.29439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9052 27.629 5.34643 8.25719 68.9889

CAGE analysis