Hb_010638_010

Information

Type -
Description -
Location Contig10638: 22749-26274
Sequence    

Annotation

kegg
ID rcu:RCOM_0798990
description RNA polymerase sigma factor rpoD, putative
nr
ID XP_012077339.1
description PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
swissprot
ID O24621
description RNA polymerase sigma factor sigC OS=Arabidopsis thaliana GN=SIGC PE=2 SV=1
trembl
ID A0A067KGK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07709 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010638_010 0.0 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
2 Hb_001379_120 0.1184621975 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
3 Hb_005694_050 0.1638778106 - - NC domain-containing family protein [Populus trichocarpa]
4 Hb_002272_220 0.1763672621 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_500 0.1791778969 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
6 Hb_000206_170 0.1871648908 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
7 Hb_001163_110 0.1886479597 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
8 Hb_000961_060 0.1900558838 - - uvb-resistance protein uvr8, putative [Ricinus communis]
9 Hb_056196_010 0.1918039044 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
10 Hb_006916_080 0.1918174124 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
11 Hb_121089_010 0.1931540304 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
12 Hb_001623_380 0.1947893083 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
13 Hb_089966_010 0.2044661033 - - -
14 Hb_000018_140 0.2054884685 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
15 Hb_000638_220 0.2059334319 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
16 Hb_004102_060 0.2094788017 - - JHL25H03.11 [Jatropha curcas]
17 Hb_091433_050 0.2114195515 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
18 Hb_003905_020 0.2120608812 - - PREDICTED: uncharacterized protein LOC105131878 isoform X1 [Populus euphratica]
19 Hb_001014_020 0.215690281 - - gene GA family protein [Populus trichocarpa]
20 Hb_002601_050 0.2157925013 - - Boron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_010638_010 Hb_010638_010 Hb_001379_120 Hb_001379_120 Hb_010638_010--Hb_001379_120 Hb_005694_050 Hb_005694_050 Hb_010638_010--Hb_005694_050 Hb_002272_220 Hb_002272_220 Hb_010638_010--Hb_002272_220 Hb_000329_500 Hb_000329_500 Hb_010638_010--Hb_000329_500 Hb_000206_170 Hb_000206_170 Hb_010638_010--Hb_000206_170 Hb_001163_110 Hb_001163_110 Hb_010638_010--Hb_001163_110 Hb_001379_120--Hb_000329_500 Hb_000961_060 Hb_000961_060 Hb_001379_120--Hb_000961_060 Hb_003517_110 Hb_003517_110 Hb_001379_120--Hb_003517_110 Hb_001379_120--Hb_001163_110 Hb_001623_380 Hb_001623_380 Hb_001379_120--Hb_001623_380 Hb_082655_010 Hb_082655_010 Hb_005694_050--Hb_082655_010 Hb_002045_090 Hb_002045_090 Hb_005694_050--Hb_002045_090 Hb_005694_050--Hb_002272_220 Hb_089966_010 Hb_089966_010 Hb_005694_050--Hb_089966_010 Hb_000000_180 Hb_000000_180 Hb_005694_050--Hb_000000_180 Hb_002411_100 Hb_002411_100 Hb_002272_220--Hb_002411_100 Hb_000390_210 Hb_000390_210 Hb_002272_220--Hb_000390_210 Hb_010557_010 Hb_010557_010 Hb_002272_220--Hb_010557_010 Hb_002272_220--Hb_001623_380 Hb_009393_130 Hb_009393_130 Hb_002272_220--Hb_009393_130 Hb_000684_200 Hb_000684_200 Hb_002272_220--Hb_000684_200 Hb_000020_090 Hb_000020_090 Hb_000329_500--Hb_000020_090 Hb_004102_060 Hb_004102_060 Hb_000329_500--Hb_004102_060 Hb_003680_060 Hb_003680_060 Hb_000329_500--Hb_003680_060 Hb_002818_150 Hb_002818_150 Hb_000329_500--Hb_002818_150 Hb_000982_100 Hb_000982_100 Hb_000329_500--Hb_000982_100 Hb_005000_110 Hb_005000_110 Hb_000329_500--Hb_005000_110 Hb_000206_170--Hb_002411_100 Hb_011519_050 Hb_011519_050 Hb_000206_170--Hb_011519_050 Hb_001405_090 Hb_001405_090 Hb_000206_170--Hb_001405_090 Hb_004459_060 Hb_004459_060 Hb_000206_170--Hb_004459_060 Hb_006620_070 Hb_006620_070 Hb_000206_170--Hb_006620_070 Hb_000206_170--Hb_002272_220 Hb_000808_130 Hb_000808_130 Hb_001163_110--Hb_000808_130 Hb_001163_110--Hb_005000_110 Hb_000711_030 Hb_000711_030 Hb_001163_110--Hb_000711_030 Hb_017434_040 Hb_017434_040 Hb_001163_110--Hb_017434_040 Hb_000638_220 Hb_000638_220 Hb_001163_110--Hb_000638_220 Hb_001163_110--Hb_000020_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0594711 0.521862 0.26177 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147981 0.0581729 0 0.0236055 0.463734

CAGE analysis