Hb_001163_110

Information

Type -
Description -
Location Contig1163: 105444-108801
Sequence    

Annotation

kegg
ID rcu:RCOM_0792850
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_012075878.1
description PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
swissprot
ID Q39183
description Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana GN=D6PKL2 PE=1 SV=1
trembl
ID A0A067KEU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10916 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase d6pkl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05029: 105393-108972
cDNA
(Sanger)
(ID:Location)		 009_A09.ab1: 105393-108221 , 037_J04.ab1: 105393-108286 , 039_J04.ab1: 105458-108198 , 042_M06.ab1: 105393-108211 , 052_E01.ab1: 105393-108246

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001163_110 0.0 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
2 Hb_000808_130 0.1253196557 - - 3-5 exonuclease, putative [Ricinus communis]
3 Hb_005000_110 0.1330414673 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
4 Hb_000711_030 0.1384785708 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
5 Hb_017434_040 0.1392920027 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
6 Hb_000638_220 0.1393231438 - - PREDICTED: photosystem I reaction center subunit N, chloroplastic [Jatropha curcas]
7 Hb_000020_090 0.1426335934 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
8 Hb_028227_060 0.1429290396 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
9 Hb_000329_500 0.1432746363 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
10 Hb_007597_030 0.14676548 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_003680_060 0.1468323854 - - hypothetical protein VITISV_022322 [Vitis vinifera]
12 Hb_001159_070 0.14771954 - - DNA photolyase, putative [Ricinus communis]
13 Hb_004884_100 0.1488176681 - - PREDICTED: lectin-domain containing receptor kinase VI.4-like [Jatropha curcas]
14 Hb_137216_010 0.1497831237 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
15 Hb_004102_060 0.151848455 - - JHL25H03.11 [Jatropha curcas]
16 Hb_004650_050 0.153034223 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
17 Hb_000123_360 0.153124664 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002007_120 0.1531791759 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
19 Hb_002495_090 0.1541037639 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
20 Hb_110266_010 0.1549334993 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]

Gene co-expression network

sample Hb_001163_110 Hb_001163_110 Hb_000808_130 Hb_000808_130 Hb_001163_110--Hb_000808_130 Hb_005000_110 Hb_005000_110 Hb_001163_110--Hb_005000_110 Hb_000711_030 Hb_000711_030 Hb_001163_110--Hb_000711_030 Hb_017434_040 Hb_017434_040 Hb_001163_110--Hb_017434_040 Hb_000638_220 Hb_000638_220 Hb_001163_110--Hb_000638_220 Hb_000020_090 Hb_000020_090 Hb_001163_110--Hb_000020_090 Hb_000808_130--Hb_005000_110 Hb_003120_020 Hb_003120_020 Hb_000808_130--Hb_003120_020 Hb_001343_030 Hb_001343_030 Hb_000808_130--Hb_001343_030 Hb_000808_130--Hb_017434_040 Hb_023344_090 Hb_023344_090 Hb_000808_130--Hb_023344_090 Hb_007597_030 Hb_007597_030 Hb_000808_130--Hb_007597_030 Hb_005000_110--Hb_001343_030 Hb_005000_110--Hb_007597_030 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250 Hb_004650_050 Hb_004650_050 Hb_000711_030--Hb_004650_050 Hb_009838_070 Hb_009838_070 Hb_000711_030--Hb_009838_070 Hb_001159_070 Hb_001159_070 Hb_000711_030--Hb_001159_070 Hb_000950_020 Hb_000950_020 Hb_000711_030--Hb_000950_020 Hb_000327_260 Hb_000327_260 Hb_000711_030--Hb_000327_260 Hb_000711_030--Hb_005000_110 Hb_000608_270 Hb_000608_270 Hb_017434_040--Hb_000608_270 Hb_143629_180 Hb_143629_180 Hb_017434_040--Hb_143629_180 Hb_001571_100 Hb_001571_100 Hb_017434_040--Hb_001571_100 Hb_002028_020 Hb_002028_020 Hb_017434_040--Hb_002028_020 Hb_041433_010 Hb_041433_010 Hb_017434_040--Hb_041433_010 Hb_110266_010 Hb_110266_010 Hb_000638_220--Hb_110266_010 Hb_000345_400 Hb_000345_400 Hb_000638_220--Hb_000345_400 Hb_000638_220--Hb_000962_090 Hb_092516_010 Hb_092516_010 Hb_000638_220--Hb_092516_010 Hb_007462_020 Hb_007462_020 Hb_000638_220--Hb_007462_020 Hb_000123_360 Hb_000123_360 Hb_000638_220--Hb_000123_360 Hb_002702_010 Hb_002702_010 Hb_000020_090--Hb_002702_010 Hb_004102_060 Hb_004102_060 Hb_000020_090--Hb_004102_060 Hb_012395_090 Hb_012395_090 Hb_000020_090--Hb_012395_090 Hb_000156_110 Hb_000156_110 Hb_000020_090--Hb_000156_110 Hb_004635_120 Hb_004635_120 Hb_000020_090--Hb_004635_120 Hb_002818_150 Hb_002818_150 Hb_000020_090--Hb_002818_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.220621 0.389891 8.08878 3.43405 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.718936 0.113113 0.15859 0.158311 6.94272

CAGE analysis