Hb_001379_120

Information

Type -
Description -
Location Contig1379: 92837-94109
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29730g
description POPTRDRAFT_753092; hypothetical protein
nr
ID XP_002298790.2
description hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GIC5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s29730g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001379_120 0.0 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
2 Hb_010638_010 0.1184621975 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
3 Hb_000329_500 0.1497836667 - - PREDICTED: uncharacterized protein LOC105643180 isoform X1 [Jatropha curcas]
4 Hb_000961_060 0.1571022659 - - uvb-resistance protein uvr8, putative [Ricinus communis]
5 Hb_003517_110 0.1608199235 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
6 Hb_001163_110 0.1674644516 - - PREDICTED: serine/threonine-protein kinase D6PKL2 [Jatropha curcas]
7 Hb_001623_380 0.1724946686 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
8 Hb_000184_010 0.1847691807 - - mutt domain protein, putative [Ricinus communis]
9 Hb_001135_070 0.1860309207 - - glutathione-s-transferase omega, putative [Ricinus communis]
10 Hb_000393_040 0.1879244438 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
11 Hb_002272_220 0.1886625754 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002681_210 0.1910300615 - - PREDICTED: uncharacterized protein LOC105633686 [Jatropha curcas]
13 Hb_004102_060 0.1926809029 - - JHL25H03.11 [Jatropha curcas]
14 Hb_000206_170 0.1934773449 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
15 Hb_005000_110 0.1938263277 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
16 Hb_017434_040 0.1962228711 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
17 Hb_000123_360 0.1974150972 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_004096_230 0.2000526732 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
19 Hb_006916_080 0.2021699799 - - PREDICTED: uncharacterized protein LOC105646751 [Jatropha curcas]
20 Hb_000808_130 0.2030353961 - - 3-5 exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_001379_120 Hb_001379_120 Hb_010638_010 Hb_010638_010 Hb_001379_120--Hb_010638_010 Hb_000329_500 Hb_000329_500 Hb_001379_120--Hb_000329_500 Hb_000961_060 Hb_000961_060 Hb_001379_120--Hb_000961_060 Hb_003517_110 Hb_003517_110 Hb_001379_120--Hb_003517_110 Hb_001163_110 Hb_001163_110 Hb_001379_120--Hb_001163_110 Hb_001623_380 Hb_001623_380 Hb_001379_120--Hb_001623_380 Hb_005694_050 Hb_005694_050 Hb_010638_010--Hb_005694_050 Hb_002272_220 Hb_002272_220 Hb_010638_010--Hb_002272_220 Hb_010638_010--Hb_000329_500 Hb_000206_170 Hb_000206_170 Hb_010638_010--Hb_000206_170 Hb_010638_010--Hb_001163_110 Hb_000020_090 Hb_000020_090 Hb_000329_500--Hb_000020_090 Hb_004102_060 Hb_004102_060 Hb_000329_500--Hb_004102_060 Hb_003680_060 Hb_003680_060 Hb_000329_500--Hb_003680_060 Hb_002818_150 Hb_002818_150 Hb_000329_500--Hb_002818_150 Hb_000982_100 Hb_000982_100 Hb_000329_500--Hb_000982_100 Hb_005000_110 Hb_005000_110 Hb_000329_500--Hb_005000_110 Hb_002843_130 Hb_002843_130 Hb_000961_060--Hb_002843_130 Hb_000483_270 Hb_000483_270 Hb_000961_060--Hb_000483_270 Hb_007317_100 Hb_007317_100 Hb_000961_060--Hb_007317_100 Hb_000123_360 Hb_000123_360 Hb_000961_060--Hb_000123_360 Hb_000961_060--Hb_003517_110 Hb_001135_070 Hb_001135_070 Hb_000961_060--Hb_001135_070 Hb_003517_110--Hb_001135_070 Hb_004994_280 Hb_004994_280 Hb_003517_110--Hb_004994_280 Hb_003517_110--Hb_000123_360 Hb_000974_040 Hb_000974_040 Hb_003517_110--Hb_000974_040 Hb_110266_010 Hb_110266_010 Hb_003517_110--Hb_110266_010 Hb_004884_100 Hb_004884_100 Hb_003517_110--Hb_004884_100 Hb_000808_130 Hb_000808_130 Hb_001163_110--Hb_000808_130 Hb_001163_110--Hb_005000_110 Hb_000711_030 Hb_000711_030 Hb_001163_110--Hb_000711_030 Hb_017434_040 Hb_017434_040 Hb_001163_110--Hb_017434_040 Hb_000638_220 Hb_000638_220 Hb_001163_110--Hb_000638_220 Hb_001163_110--Hb_000020_090 Hb_001623_380--Hb_001135_070 Hb_008707_040 Hb_008707_040 Hb_001623_380--Hb_008707_040 Hb_001623_380--Hb_003680_060 Hb_001623_380--Hb_002272_220 Hb_177281_010 Hb_177281_010 Hb_001623_380--Hb_177281_010 Hb_000393_040 Hb_000393_040 Hb_001623_380--Hb_000393_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0410458 0.640619 0.27964 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0937618 0.0737476 0 0 0.530333

CAGE analysis