Hb_000483_270

Information

Type -
Description -
Location Contig483: 251201-253690
Sequence    

Annotation

kegg
ID rcu:RCOM_0703150
description transcription factor, putative
nr
ID XP_012070103.1
description PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KUX7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03488 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44823: 251187-253678 , PASA_asmbl_44824: 252470-253678
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_270 0.0 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
2 Hb_007317_100 0.1253609017 - - Peflin, putative [Ricinus communis]
3 Hb_002843_130 0.127341765 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
4 Hb_000123_360 0.1397167895 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000961_060 0.1429615511 - - uvb-resistance protein uvr8, putative [Ricinus communis]
6 Hb_002078_120 0.1499910055 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
7 Hb_000500_330 0.1576294107 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
8 Hb_000028_150 0.1577066368 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
9 Hb_002799_120 0.1603922213 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
10 Hb_002540_060 0.1616135994 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
11 Hb_000494_010 0.1633532175 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
12 Hb_001343_120 0.1634243654 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004846_230 0.1636267142 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
14 Hb_000358_160 0.164986721 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
15 Hb_000110_240 0.1650771102 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
16 Hb_005116_130 0.1653720464 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
17 Hb_004007_170 0.1677305199 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
18 Hb_002942_120 0.1702149672 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
19 Hb_006788_090 0.1732665573 - - -
20 Hb_003638_040 0.175228177 - - kinesin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000483_270 Hb_000483_270 Hb_007317_100 Hb_007317_100 Hb_000483_270--Hb_007317_100 Hb_002843_130 Hb_002843_130 Hb_000483_270--Hb_002843_130 Hb_000123_360 Hb_000123_360 Hb_000483_270--Hb_000123_360 Hb_000961_060 Hb_000961_060 Hb_000483_270--Hb_000961_060 Hb_002078_120 Hb_002078_120 Hb_000483_270--Hb_002078_120 Hb_000500_330 Hb_000500_330 Hb_000483_270--Hb_000500_330 Hb_007317_100--Hb_002843_130 Hb_002799_120 Hb_002799_120 Hb_007317_100--Hb_002799_120 Hb_000152_650 Hb_000152_650 Hb_007317_100--Hb_000152_650 Hb_000264_160 Hb_000264_160 Hb_007317_100--Hb_000264_160 Hb_007317_100--Hb_000961_060 Hb_163950_090 Hb_163950_090 Hb_002843_130--Hb_163950_090 Hb_000358_160 Hb_000358_160 Hb_002843_130--Hb_000358_160 Hb_002843_130--Hb_000123_360 Hb_005116_130 Hb_005116_130 Hb_002843_130--Hb_005116_130 Hb_000123_360--Hb_000358_160 Hb_110266_010 Hb_110266_010 Hb_000123_360--Hb_110266_010 Hb_001442_050 Hb_001442_050 Hb_000123_360--Hb_001442_050 Hb_002007_120 Hb_002007_120 Hb_000123_360--Hb_002007_120 Hb_000345_400 Hb_000345_400 Hb_000123_360--Hb_000345_400 Hb_000638_220 Hb_000638_220 Hb_000123_360--Hb_000638_220 Hb_000961_060--Hb_002843_130 Hb_000961_060--Hb_000123_360 Hb_003517_110 Hb_003517_110 Hb_000961_060--Hb_003517_110 Hb_001135_070 Hb_001135_070 Hb_000961_060--Hb_001135_070 Hb_002045_090 Hb_002045_090 Hb_002078_120--Hb_002045_090 Hb_003397_030 Hb_003397_030 Hb_002078_120--Hb_003397_030 Hb_000000_180 Hb_000000_180 Hb_002078_120--Hb_000000_180 Hb_001386_090 Hb_001386_090 Hb_002078_120--Hb_001386_090 Hb_029510_130 Hb_029510_130 Hb_002078_120--Hb_029510_130 Hb_000110_240 Hb_000110_240 Hb_000500_330--Hb_000110_240 Hb_000494_010 Hb_000494_010 Hb_000500_330--Hb_000494_010 Hb_004846_230 Hb_004846_230 Hb_000500_330--Hb_004846_230 Hb_000028_150 Hb_000028_150 Hb_000500_330--Hb_000028_150 Hb_000500_330--Hb_005116_130 Hb_046590_010 Hb_046590_010 Hb_000500_330--Hb_046590_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87395 10.2748 236.203 41.1864 0.860134 3.84039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.439 12.4717 1.08594 13.2428 81.4459

CAGE analysis