Hb_002843_130

Information

Type -
Description -
Location Contig2843: 93250-95496
Sequence    

Annotation

kegg
ID pop:POPTR_0012s03020g
description POPTRDRAFT_823232; hypothetical protein
nr
ID XP_012084575.1
description PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
swissprot
ID Q93VH6
description GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=1
trembl
ID A0A067JX79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20934 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29756: 93737-94057 , PASA_asmbl_29757: 93095-95554
cDNA
(Sanger)
(ID:Location)		 007_P19r.ab1: 95860-98216

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_130 0.0 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
2 Hb_007317_100 0.0941718326 - - Peflin, putative [Ricinus communis]
3 Hb_163950_090 0.1045919081 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
4 Hb_000358_160 0.1172826347 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
5 Hb_000123_360 0.1182505761 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000483_270 0.127341765 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
7 Hb_005116_130 0.1306188175 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
8 Hb_008221_190 0.132588217 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
9 Hb_000961_060 0.133466207 - - uvb-resistance protein uvr8, putative [Ricinus communis]
10 Hb_001442_050 0.1376370898 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
11 Hb_002710_040 0.1394213091 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
12 Hb_004218_060 0.1399523259 - - annexin [Manihot esculenta]
13 Hb_003387_010 0.1417612607 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
14 Hb_000110_240 0.1424103535 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
15 Hb_000084_210 0.143286984 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
16 Hb_002799_120 0.1452124871 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
17 Hb_002499_050 0.1453227301 - - receptor protein kinase, putative [Ricinus communis]
18 Hb_145188_010 0.1465770393 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
19 Hb_002540_060 0.147918374 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
20 Hb_000494_010 0.1486378881 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]

Gene co-expression network

sample Hb_002843_130 Hb_002843_130 Hb_007317_100 Hb_007317_100 Hb_002843_130--Hb_007317_100 Hb_163950_090 Hb_163950_090 Hb_002843_130--Hb_163950_090 Hb_000358_160 Hb_000358_160 Hb_002843_130--Hb_000358_160 Hb_000123_360 Hb_000123_360 Hb_002843_130--Hb_000123_360 Hb_000483_270 Hb_000483_270 Hb_002843_130--Hb_000483_270 Hb_005116_130 Hb_005116_130 Hb_002843_130--Hb_005116_130 Hb_002799_120 Hb_002799_120 Hb_007317_100--Hb_002799_120 Hb_007317_100--Hb_000483_270 Hb_000152_650 Hb_000152_650 Hb_007317_100--Hb_000152_650 Hb_000264_160 Hb_000264_160 Hb_007317_100--Hb_000264_160 Hb_000961_060 Hb_000961_060 Hb_007317_100--Hb_000961_060 Hb_005736_120 Hb_005736_120 Hb_163950_090--Hb_005736_120 Hb_001942_060 Hb_001942_060 Hb_163950_090--Hb_001942_060 Hb_002710_040 Hb_002710_040 Hb_163950_090--Hb_002710_040 Hb_000749_140 Hb_000749_140 Hb_163950_090--Hb_000749_140 Hb_004218_060 Hb_004218_060 Hb_163950_090--Hb_004218_060 Hb_145188_010 Hb_145188_010 Hb_163950_090--Hb_145188_010 Hb_092516_010 Hb_092516_010 Hb_000358_160--Hb_092516_010 Hb_001655_080 Hb_001655_080 Hb_000358_160--Hb_001655_080 Hb_027684_010 Hb_027684_010 Hb_000358_160--Hb_027684_010 Hb_021443_060 Hb_021443_060 Hb_000358_160--Hb_021443_060 Hb_000313_250 Hb_000313_250 Hb_000358_160--Hb_000313_250 Hb_000345_400 Hb_000345_400 Hb_000358_160--Hb_000345_400 Hb_000123_360--Hb_000358_160 Hb_110266_010 Hb_110266_010 Hb_000123_360--Hb_110266_010 Hb_001442_050 Hb_001442_050 Hb_000123_360--Hb_001442_050 Hb_002007_120 Hb_002007_120 Hb_000123_360--Hb_002007_120 Hb_000123_360--Hb_000345_400 Hb_000638_220 Hb_000638_220 Hb_000123_360--Hb_000638_220 Hb_000483_270--Hb_000123_360 Hb_000483_270--Hb_000961_060 Hb_002078_120 Hb_002078_120 Hb_000483_270--Hb_002078_120 Hb_000500_330 Hb_000500_330 Hb_000483_270--Hb_000500_330 Hb_000494_010 Hb_000494_010 Hb_005116_130--Hb_000494_010 Hb_046590_010 Hb_046590_010 Hb_005116_130--Hb_046590_010 Hb_000110_240 Hb_000110_240 Hb_005116_130--Hb_000110_240 Hb_000188_070 Hb_000188_070 Hb_005116_130--Hb_000188_070 Hb_005116_130--Hb_001442_050 Hb_005116_130--Hb_001655_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.547847 17.9764 2.9131 0.157585 0.212181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.368416 0.289373 0 0.553786 7.21756

CAGE analysis