Hb_000961_060

Information

Type -
Description -
Location Contig961: 131095-132796
Sequence    

Annotation

kegg
ID rcu:RCOM_1698650
description uvb-resistance protein uvr8, putative
nr
ID XP_002522929.1
description uvb-resistance protein uvr8, putative [Ricinus communis]
swissprot
ID Q9FN03
description Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1
trembl
ID B9SAB0
description Uvb-resistance protein uvr8, putative OS=Ricinus communis GN=RCOM_1698650 PE=4 SV=1
Gene Ontology
ID GO:0000785
description ultraviolet-b receptor uvr8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63724: 130760-132554 , PASA_asmbl_63726: 132593-132879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000961_060 0.0 - - uvb-resistance protein uvr8, putative [Ricinus communis]
2 Hb_002843_130 0.133466207 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
3 Hb_000483_270 0.1429615511 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
4 Hb_007317_100 0.1433972259 - - Peflin, putative [Ricinus communis]
5 Hb_000123_360 0.1461775057 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_003517_110 0.1479626473 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
7 Hb_001135_070 0.1542069398 - - glutathione-s-transferase omega, putative [Ricinus communis]
8 Hb_001379_120 0.1571022659 - - hypothetical protein POPTR_0001s29730g [Populus trichocarpa]
9 Hb_001623_380 0.161436089 - - PREDICTED: 7-hydroxymethyl chlorophyll a reductase, chloroplastic [Jatropha curcas]
10 Hb_000926_030 0.1693388074 - - zinc finger protein, putative [Ricinus communis]
11 Hb_006501_130 0.1734167349 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000358_160 0.1736591282 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
13 Hb_008221_190 0.1753744808 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
14 Hb_000393_040 0.1754222468 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
15 Hb_004102_060 0.1767691603 - - JHL25H03.11 [Jatropha curcas]
16 Hb_089966_010 0.1768302272 - - -
17 Hb_001439_160 0.1771508015 - - PREDICTED: uncharacterized protein LOC105644097 [Jatropha curcas]
18 Hb_163950_090 0.1773385342 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
19 Hb_000974_040 0.1778204591 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
20 Hb_110266_010 0.1790441976 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]

Gene co-expression network

sample Hb_000961_060 Hb_000961_060 Hb_002843_130 Hb_002843_130 Hb_000961_060--Hb_002843_130 Hb_000483_270 Hb_000483_270 Hb_000961_060--Hb_000483_270 Hb_007317_100 Hb_007317_100 Hb_000961_060--Hb_007317_100 Hb_000123_360 Hb_000123_360 Hb_000961_060--Hb_000123_360 Hb_003517_110 Hb_003517_110 Hb_000961_060--Hb_003517_110 Hb_001135_070 Hb_001135_070 Hb_000961_060--Hb_001135_070 Hb_002843_130--Hb_007317_100 Hb_163950_090 Hb_163950_090 Hb_002843_130--Hb_163950_090 Hb_000358_160 Hb_000358_160 Hb_002843_130--Hb_000358_160 Hb_002843_130--Hb_000123_360 Hb_002843_130--Hb_000483_270 Hb_005116_130 Hb_005116_130 Hb_002843_130--Hb_005116_130 Hb_000483_270--Hb_007317_100 Hb_000483_270--Hb_000123_360 Hb_002078_120 Hb_002078_120 Hb_000483_270--Hb_002078_120 Hb_000500_330 Hb_000500_330 Hb_000483_270--Hb_000500_330 Hb_002799_120 Hb_002799_120 Hb_007317_100--Hb_002799_120 Hb_000152_650 Hb_000152_650 Hb_007317_100--Hb_000152_650 Hb_000264_160 Hb_000264_160 Hb_007317_100--Hb_000264_160 Hb_000123_360--Hb_000358_160 Hb_110266_010 Hb_110266_010 Hb_000123_360--Hb_110266_010 Hb_001442_050 Hb_001442_050 Hb_000123_360--Hb_001442_050 Hb_002007_120 Hb_002007_120 Hb_000123_360--Hb_002007_120 Hb_000345_400 Hb_000345_400 Hb_000123_360--Hb_000345_400 Hb_000638_220 Hb_000638_220 Hb_000123_360--Hb_000638_220 Hb_003517_110--Hb_001135_070 Hb_004994_280 Hb_004994_280 Hb_003517_110--Hb_004994_280 Hb_003517_110--Hb_000123_360 Hb_000974_040 Hb_000974_040 Hb_003517_110--Hb_000974_040 Hb_003517_110--Hb_110266_010 Hb_004884_100 Hb_004884_100 Hb_003517_110--Hb_004884_100 Hb_177281_010 Hb_177281_010 Hb_001135_070--Hb_177281_010 Hb_001623_380 Hb_001623_380 Hb_001135_070--Hb_001623_380 Hb_001135_070--Hb_000974_040 Hb_000393_040 Hb_000393_040 Hb_001135_070--Hb_000393_040 Hb_001135_070--Hb_000123_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.312283 13.3983 3.32506 0.165198 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00119 0.786415 0 0.269703 6.35264

CAGE analysis