Hb_003517_110

Information

Type -
Description -
Location Contig3517: 152350-154106
Sequence    

Annotation

kegg
ID rcu:RCOM_0047200
description nucleic acid binding protein, putative
nr
ID XP_012070968.1
description PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00995 PE=4 SV=1
Gene Ontology
ID GO:0003950
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36545: 153936-154111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003517_110 0.0 - - PREDICTED: uncharacterized protein LOC105633058 [Jatropha curcas]
2 Hb_001135_070 0.1022347404 - - glutathione-s-transferase omega, putative [Ricinus communis]
3 Hb_004994_280 0.1219694512 - - hypothetical protein JCGZ_14421 [Jatropha curcas]
4 Hb_000123_360 0.1237607801 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000974_040 0.1272878254 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Jatropha curcas]
6 Hb_110266_010 0.1345494781 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
7 Hb_004884_100 0.1362274103 - - PREDICTED: lectin-domain containing receptor kinase VI.4-like [Jatropha curcas]
8 Hb_000393_040 0.138428063 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
9 Hb_002007_120 0.1403901604 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
10 Hb_000648_070 0.1414437926 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
11 Hb_011930_190 0.1468378566 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
12 Hb_000080_070 0.1476138124 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
13 Hb_000961_060 0.1479626473 - - uvb-resistance protein uvr8, putative [Ricinus communis]
14 Hb_028227_060 0.1484287947 - - PREDICTED: non-specific lipid transfer protein GPI-anchored 1-like [Populus euphratica]
15 Hb_002843_130 0.1488683443 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]
16 Hb_005000_110 0.1498592918 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
17 Hb_048141_050 0.1502506049 - - hypothetical protein PRUPE_ppa009153mg [Prunus persica]
18 Hb_001662_090 0.1522333542 - - PREDICTED: thiosulfate sulfurtransferase 16, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_006198_030 0.1541399581 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000172_660 0.1542954398 - - flavonoid 3-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003517_110 Hb_003517_110 Hb_001135_070 Hb_001135_070 Hb_003517_110--Hb_001135_070 Hb_004994_280 Hb_004994_280 Hb_003517_110--Hb_004994_280 Hb_000123_360 Hb_000123_360 Hb_003517_110--Hb_000123_360 Hb_000974_040 Hb_000974_040 Hb_003517_110--Hb_000974_040 Hb_110266_010 Hb_110266_010 Hb_003517_110--Hb_110266_010 Hb_004884_100 Hb_004884_100 Hb_003517_110--Hb_004884_100 Hb_177281_010 Hb_177281_010 Hb_001135_070--Hb_177281_010 Hb_001623_380 Hb_001623_380 Hb_001135_070--Hb_001623_380 Hb_001135_070--Hb_000974_040 Hb_000393_040 Hb_000393_040 Hb_001135_070--Hb_000393_040 Hb_001135_070--Hb_000123_360 Hb_004994_280--Hb_004884_100 Hb_078954_030 Hb_078954_030 Hb_004994_280--Hb_078954_030 Hb_000530_040 Hb_000530_040 Hb_004994_280--Hb_000530_040 Hb_004994_280--Hb_110266_010 Hb_048141_050 Hb_048141_050 Hb_004994_280--Hb_048141_050 Hb_001424_010 Hb_001424_010 Hb_004994_280--Hb_001424_010 Hb_000358_160 Hb_000358_160 Hb_000123_360--Hb_000358_160 Hb_000123_360--Hb_110266_010 Hb_001442_050 Hb_001442_050 Hb_000123_360--Hb_001442_050 Hb_002007_120 Hb_002007_120 Hb_000123_360--Hb_002007_120 Hb_000345_400 Hb_000345_400 Hb_000123_360--Hb_000345_400 Hb_000638_220 Hb_000638_220 Hb_000123_360--Hb_000638_220 Hb_028227_060 Hb_028227_060 Hb_000974_040--Hb_028227_060 Hb_000974_040--Hb_177281_010 Hb_137216_010 Hb_137216_010 Hb_000974_040--Hb_137216_010 Hb_000974_040--Hb_000393_040 Hb_000974_040--Hb_000123_360 Hb_110266_010--Hb_002007_120 Hb_092516_010 Hb_092516_010 Hb_110266_010--Hb_092516_010 Hb_000313_250 Hb_000313_250 Hb_110266_010--Hb_000313_250 Hb_110266_010--Hb_048141_050 Hb_000294_020 Hb_000294_020 Hb_110266_010--Hb_000294_020 Hb_110266_010--Hb_078954_030 Hb_004884_100--Hb_002007_120 Hb_004884_100--Hb_028227_060 Hb_000648_070 Hb_000648_070 Hb_004884_100--Hb_000648_070 Hb_004884_100--Hb_000530_040 Hb_003573_030 Hb_003573_030 Hb_004884_100--Hb_003573_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.133141 3.59908 0.747035 0 0.058865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130221 0.153594 0 0 2.37008

CAGE analysis