Hb_005694_050

Information

Type -
Description -
Location Contig5694: 36477-41172
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09680g
description POPTRDRAFT_834794; NC domain-containing family protein
nr
ID XP_002320878.1
description NC domain-containing family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I904
description NC domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s09680g PE=4 SV=1
Gene Ontology
ID GO:0016746
description nc domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49228: 36548-40809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005694_050 0.0 - - NC domain-containing family protein [Populus trichocarpa]
2 Hb_082655_010 0.1613586497 - - rhodanese-like domain-containing family protein [Populus trichocarpa]
3 Hb_002045_090 0.1632758587 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
4 Hb_010638_010 0.1638778106 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
5 Hb_002272_220 0.1655014821 - - conserved hypothetical protein [Ricinus communis]
6 Hb_089966_010 0.1658252793 - - -
7 Hb_000000_180 0.1718513774 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
8 Hb_002078_120 0.1792404945 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
9 Hb_000958_120 0.1793039479 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
10 Hb_000300_100 0.180130929 - - NADH-cytochrome b5 reductase 1 [Morus notabilis]
11 Hb_006153_150 0.1820428522 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
12 Hb_002641_120 0.1843582599 - - PREDICTED: calmodulin [Jatropha curcas]
13 Hb_000206_170 0.188553033 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
14 Hb_002701_070 0.1893282185 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
15 Hb_054865_010 0.1895676146 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
16 Hb_000483_270 0.1910585602 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
17 Hb_000270_280 0.1932476594 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
18 Hb_012545_040 0.1936296525 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_004195_140 0.1937704366 - - Sec14 cytosolic factor, putative [Ricinus communis]
20 Hb_000991_020 0.1964230628 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_005694_050 Hb_005694_050 Hb_082655_010 Hb_082655_010 Hb_005694_050--Hb_082655_010 Hb_002045_090 Hb_002045_090 Hb_005694_050--Hb_002045_090 Hb_010638_010 Hb_010638_010 Hb_005694_050--Hb_010638_010 Hb_002272_220 Hb_002272_220 Hb_005694_050--Hb_002272_220 Hb_089966_010 Hb_089966_010 Hb_005694_050--Hb_089966_010 Hb_000000_180 Hb_000000_180 Hb_005694_050--Hb_000000_180 Hb_017895_060 Hb_017895_060 Hb_082655_010--Hb_017895_060 Hb_082655_010--Hb_002045_090 Hb_000958_120 Hb_000958_120 Hb_082655_010--Hb_000958_120 Hb_005074_050 Hb_005074_050 Hb_082655_010--Hb_005074_050 Hb_009545_070 Hb_009545_070 Hb_082655_010--Hb_009545_070 Hb_004195_140 Hb_004195_140 Hb_002045_090--Hb_004195_140 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_002045_090--Hb_000958_120 Hb_003397_030 Hb_003397_030 Hb_002045_090--Hb_003397_030 Hb_001141_050 Hb_001141_050 Hb_002045_090--Hb_001141_050 Hb_000224_080 Hb_000224_080 Hb_002045_090--Hb_000224_080 Hb_001379_120 Hb_001379_120 Hb_010638_010--Hb_001379_120 Hb_010638_010--Hb_002272_220 Hb_000329_500 Hb_000329_500 Hb_010638_010--Hb_000329_500 Hb_000206_170 Hb_000206_170 Hb_010638_010--Hb_000206_170 Hb_001163_110 Hb_001163_110 Hb_010638_010--Hb_001163_110 Hb_002411_100 Hb_002411_100 Hb_002272_220--Hb_002411_100 Hb_000390_210 Hb_000390_210 Hb_002272_220--Hb_000390_210 Hb_010557_010 Hb_010557_010 Hb_002272_220--Hb_010557_010 Hb_001623_380 Hb_001623_380 Hb_002272_220--Hb_001623_380 Hb_009393_130 Hb_009393_130 Hb_002272_220--Hb_009393_130 Hb_000684_200 Hb_000684_200 Hb_002272_220--Hb_000684_200 Hb_143004_020 Hb_143004_020 Hb_089966_010--Hb_143004_020 Hb_000749_260 Hb_000749_260 Hb_089966_010--Hb_000749_260 Hb_001544_050 Hb_001544_050 Hb_089966_010--Hb_001544_050 Hb_089966_010--Hb_000390_210 Hb_089966_010--Hb_002272_220 Hb_000465_410 Hb_000465_410 Hb_089966_010--Hb_000465_410 Hb_012545_040 Hb_012545_040 Hb_000000_180--Hb_012545_040 Hb_001519_170 Hb_001519_170 Hb_000000_180--Hb_001519_170 Hb_000146_030 Hb_000146_030 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_001711_060 Hb_001711_060 Hb_000000_180--Hb_001711_060 Hb_004459_060 Hb_004459_060 Hb_000000_180--Hb_004459_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65855 5.15746 73.9692 27.788 0.414151 0.109797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0371 6.49225 2.71623 5.76916 38.9816

CAGE analysis