Hb_009178_070

Information

Type -
Description -
Location Contig9178: 40986-42724
Sequence    

Annotation

kegg
ID rcu:RCOM_0204940
description structural molecule, putative
nr
ID XP_012076316.1
description PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
swissprot
ID Q941D3
description Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1
trembl
ID A0A067KEK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07004 PE=4 SV=1
Gene Ontology
ID GO:0009534
description probable plastid-lipid-associated protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62307: 40990-42732
cDNA
(Sanger)
(ID:Location)		 012_N10.ab1: 41197-42724 , 029_G16.ab1: 41197-42724

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009178_070 0.0 - - PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Jatropha curcas]
2 Hb_002150_130 0.1152560337 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
3 Hb_088500_010 0.1156418265 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 [Jatropha curcas]
4 Hb_001124_190 0.1180513369 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003209_010 0.1199774509 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
6 Hb_005914_050 0.1277448458 - - PREDICTED: 50S ribosomal protein L28, chloroplastic [Jatropha curcas]
7 Hb_000922_340 0.1355663873 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
8 Hb_000176_010 0.1357536983 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
9 Hb_000042_290 0.1419221974 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
10 Hb_004117_040 0.1509339588 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
11 Hb_163950_070 0.1514027507 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
12 Hb_001124_180 0.1520280402 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
13 Hb_000110_230 0.1566305426 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
14 Hb_000627_300 0.1573280981 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
15 Hb_003038_100 0.1592687151 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_004586_430 0.1596024194 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
17 Hb_000059_270 0.1599291311 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
18 Hb_001277_100 0.161769055 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
19 Hb_001329_090 0.1625083491 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003666_040 0.1626347189 - - PREDICTED: uncharacterized protein LOC105639624 [Jatropha curcas]

Gene co-expression network

sample Hb_009178_070 Hb_009178_070 Hb_002150_130 Hb_002150_130 Hb_009178_070--Hb_002150_130 Hb_088500_010 Hb_088500_010 Hb_009178_070--Hb_088500_010 Hb_001124_190 Hb_001124_190 Hb_009178_070--Hb_001124_190 Hb_003209_010 Hb_003209_010 Hb_009178_070--Hb_003209_010 Hb_005914_050 Hb_005914_050 Hb_009178_070--Hb_005914_050 Hb_000922_340 Hb_000922_340 Hb_009178_070--Hb_000922_340 Hb_000042_290 Hb_000042_290 Hb_002150_130--Hb_000042_290 Hb_002150_130--Hb_005914_050 Hb_000176_010 Hb_000176_010 Hb_002150_130--Hb_000176_010 Hb_000627_300 Hb_000627_300 Hb_002150_130--Hb_000627_300 Hb_004117_040 Hb_004117_040 Hb_002150_130--Hb_004117_040 Hb_000059_270 Hb_000059_270 Hb_088500_010--Hb_000059_270 Hb_002053_010 Hb_002053_010 Hb_088500_010--Hb_002053_010 Hb_088500_010--Hb_001124_190 Hb_001124_180 Hb_001124_180 Hb_088500_010--Hb_001124_180 Hb_000110_230 Hb_000110_230 Hb_088500_010--Hb_000110_230 Hb_001124_190--Hb_001124_180 Hb_169209_010 Hb_169209_010 Hb_001124_190--Hb_169209_010 Hb_001124_190--Hb_005914_050 Hb_001124_190--Hb_000042_290 Hb_000676_020 Hb_000676_020 Hb_001124_190--Hb_000676_020 Hb_001124_190--Hb_000176_010 Hb_003209_010--Hb_000922_340 Hb_003209_010--Hb_005914_050 Hb_005333_200 Hb_005333_200 Hb_003209_010--Hb_005333_200 Hb_003209_010--Hb_004117_040 Hb_003209_010--Hb_002150_130 Hb_012545_040 Hb_012545_040 Hb_005914_050--Hb_012545_040 Hb_005914_050--Hb_000176_010 Hb_005914_050--Hb_000676_020 Hb_000473_050 Hb_000473_050 Hb_000922_340--Hb_000473_050 Hb_000922_340--Hb_000042_290 Hb_042083_040 Hb_042083_040 Hb_000922_340--Hb_042083_040 Hb_000922_340--Hb_005333_200 Hb_000120_990 Hb_000120_990 Hb_000922_340--Hb_000120_990
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2977 6.5894 109.131 62.6491 22.6873 9.54379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.6356 46.189 23.8178 7.0377 119.606

CAGE analysis