Hb_005217_030

Information

Type -
Description -
Location Contig5217: 38318-43477
Sequence    

Annotation

kegg
ID rcu:RCOM_1684250
description Transcriptional corepressor SEUSS, putative
nr
ID XP_012086996.1
description PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
swissprot
ID Q94BP0
description Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana GN=SLK2 PE=2 SV=1
trembl
ID A0A067JZR9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20661 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46815: 40838-42171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005217_030 0.0 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
2 Hb_001430_020 0.0995444367 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
3 Hb_000181_060 0.1110194153 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
4 Hb_000140_440 0.1123422266 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
5 Hb_000320_190 0.1128596999 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
6 Hb_153553_040 0.1140844367 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
7 Hb_011476_030 0.1199246435 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
8 Hb_012779_080 0.1203738353 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
9 Hb_002218_020 0.1210389472 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
10 Hb_008375_030 0.1252574193 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
11 Hb_102948_010 0.1259033375 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
12 Hb_005665_090 0.126416416 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
13 Hb_003640_050 0.1267949549 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_005333_200 0.1281266996 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic-like [Jatropha curcas]
15 Hb_003883_010 0.1293546546 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
16 Hb_030545_010 0.1323929579 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
17 Hb_005332_080 0.1328606197 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
18 Hb_000212_250 0.1332591915 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001623_490 0.1341056611 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
20 Hb_002915_010 0.1348474679 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005217_030 Hb_005217_030 Hb_001430_020 Hb_001430_020 Hb_005217_030--Hb_001430_020 Hb_000181_060 Hb_000181_060 Hb_005217_030--Hb_000181_060 Hb_000140_440 Hb_000140_440 Hb_005217_030--Hb_000140_440 Hb_000320_190 Hb_000320_190 Hb_005217_030--Hb_000320_190 Hb_153553_040 Hb_153553_040 Hb_005217_030--Hb_153553_040 Hb_011476_030 Hb_011476_030 Hb_005217_030--Hb_011476_030 Hb_102948_010 Hb_102948_010 Hb_001430_020--Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_001430_020--Hb_002218_020 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_003883_010 Hb_003883_010 Hb_001430_020--Hb_003883_010 Hb_005235_070 Hb_005235_070 Hb_001430_020--Hb_005235_070 Hb_000555_020 Hb_000555_020 Hb_001430_020--Hb_000555_020 Hb_004994_080 Hb_004994_080 Hb_000181_060--Hb_004994_080 Hb_000284_130 Hb_000284_130 Hb_000181_060--Hb_000284_130 Hb_000194_010 Hb_000194_010 Hb_000181_060--Hb_000194_010 Hb_007263_010 Hb_007263_010 Hb_000181_060--Hb_007263_010 Hb_002027_320 Hb_002027_320 Hb_000181_060--Hb_002027_320 Hb_001623_490 Hb_001623_490 Hb_000181_060--Hb_001623_490 Hb_006555_040 Hb_006555_040 Hb_000140_440--Hb_006555_040 Hb_000140_440--Hb_004994_080 Hb_155025_010 Hb_155025_010 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_000140_440--Hb_002218_020 Hb_000140_440--Hb_000181_060 Hb_012779_080 Hb_012779_080 Hb_000320_190--Hb_012779_080 Hb_160271_010 Hb_160271_010 Hb_000320_190--Hb_160271_010 Hb_002915_010 Hb_002915_010 Hb_000320_190--Hb_002915_010 Hb_001396_020 Hb_001396_020 Hb_000320_190--Hb_001396_020 Hb_000645_180 Hb_000645_180 Hb_000320_190--Hb_000645_180 Hb_005665_090 Hb_005665_090 Hb_000320_190--Hb_005665_090 Hb_000212_250 Hb_000212_250 Hb_153553_040--Hb_000212_250 Hb_000445_210 Hb_000445_210 Hb_153553_040--Hb_000445_210 Hb_153553_040--Hb_000140_440 Hb_007217_010 Hb_007217_010 Hb_153553_040--Hb_007217_010 Hb_153553_040--Hb_011476_030 Hb_011476_030--Hb_007217_010 Hb_000574_470 Hb_000574_470 Hb_011476_030--Hb_000574_470 Hb_011476_030--Hb_000212_250 Hb_027445_100 Hb_027445_100 Hb_011476_030--Hb_027445_100 Hb_011476_030--Hb_002915_010 Hb_011476_030--Hb_005665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.777394 1.33344 4.9219 1.72731 0.509321 0.858387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2132 0.666727 0.749774 0.367275 2.66835

CAGE analysis