Hb_000445_210

Information

Type transcription factor
Description TF Family: PHD
Location Contig445: 219722-226455
Sequence    

Annotation

kegg
ID rcu:RCOM_0561470
description DNA binding protein, putative
nr
ID XP_012078337.1
description PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
swissprot
ID Q6PDK2
description Histone-lysine N-methyltransferase 2D OS=Mus musculus GN=Kmt2d PE=1 SV=2
trembl
ID A0A067KM46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12166 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring fyve phd-type zinc finger family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42905: 220504-226368 , PASA_asmbl_42906: 221355-221711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_210 0.0 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
2 Hb_008120_040 0.1065637224 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
3 Hb_153553_040 0.1113659952 - - hypothetical protein JCGZ_19478 [Jatropha curcas]
4 Hb_004577_010 0.1120680091 - - PREDICTED: transmembrane protein 45A [Prunus mume]
5 Hb_000270_600 0.1131909443 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
6 Hb_155025_010 0.121061258 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
7 Hb_015807_080 0.1233152809 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
8 Hb_000928_250 0.123384801 - - calcium ion binding protein, putative [Ricinus communis]
9 Hb_001663_130 0.1236978168 - - acyl-CoA thioesterase, putative [Ricinus communis]
10 Hb_001369_030 0.1242735144 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
11 Hb_001247_210 0.1257953918 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000453_230 0.1260014084 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_005941_020 0.1270471428 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
14 Hb_001168_070 0.1274729313 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
15 Hb_008375_030 0.1284351639 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
16 Hb_011476_030 0.1295625333 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
17 Hb_000260_160 0.132292789 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
18 Hb_023091_010 0.1345180052 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
19 Hb_027380_210 0.1347042132 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
20 Hb_001766_070 0.1347047107 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000445_210 Hb_000445_210 Hb_008120_040 Hb_008120_040 Hb_000445_210--Hb_008120_040 Hb_153553_040 Hb_153553_040 Hb_000445_210--Hb_153553_040 Hb_004577_010 Hb_004577_010 Hb_000445_210--Hb_004577_010 Hb_000270_600 Hb_000270_600 Hb_000445_210--Hb_000270_600 Hb_155025_010 Hb_155025_010 Hb_000445_210--Hb_155025_010 Hb_015807_080 Hb_015807_080 Hb_000445_210--Hb_015807_080 Hb_000673_010 Hb_000673_010 Hb_008120_040--Hb_000673_010 Hb_008120_040--Hb_015807_080 Hb_001766_070 Hb_001766_070 Hb_008120_040--Hb_001766_070 Hb_000260_160 Hb_000260_160 Hb_008120_040--Hb_000260_160 Hb_000979_140 Hb_000979_140 Hb_008120_040--Hb_000979_140 Hb_000506_110 Hb_000506_110 Hb_008120_040--Hb_000506_110 Hb_000212_250 Hb_000212_250 Hb_153553_040--Hb_000212_250 Hb_000140_440 Hb_000140_440 Hb_153553_040--Hb_000140_440 Hb_005217_030 Hb_005217_030 Hb_153553_040--Hb_005217_030 Hb_007217_010 Hb_007217_010 Hb_153553_040--Hb_007217_010 Hb_011476_030 Hb_011476_030 Hb_153553_040--Hb_011476_030 Hb_000300_560 Hb_000300_560 Hb_004577_010--Hb_000300_560 Hb_011188_010 Hb_011188_010 Hb_004577_010--Hb_011188_010 Hb_004162_220 Hb_004162_220 Hb_004577_010--Hb_004162_220 Hb_001663_130 Hb_001663_130 Hb_004577_010--Hb_001663_130 Hb_002686_410 Hb_002686_410 Hb_004577_010--Hb_002686_410 Hb_003058_140 Hb_003058_140 Hb_004577_010--Hb_003058_140 Hb_000270_600--Hb_001766_070 Hb_000270_600--Hb_000673_010 Hb_000011_240 Hb_000011_240 Hb_000270_600--Hb_000011_240 Hb_001409_060 Hb_001409_060 Hb_000270_600--Hb_001409_060 Hb_001430_020 Hb_001430_020 Hb_000270_600--Hb_001430_020 Hb_155025_010--Hb_000140_440 Hb_002265_010 Hb_002265_010 Hb_155025_010--Hb_002265_010 Hb_006120_040 Hb_006120_040 Hb_155025_010--Hb_006120_040 Hb_006555_040 Hb_006555_040 Hb_155025_010--Hb_006555_040 Hb_000836_350 Hb_000836_350 Hb_155025_010--Hb_000836_350 Hb_001322_020 Hb_001322_020 Hb_155025_010--Hb_001322_020 Hb_000086_640 Hb_000086_640 Hb_015807_080--Hb_000086_640 Hb_004117_270 Hb_004117_270 Hb_015807_080--Hb_004117_270 Hb_104920_010 Hb_104920_010 Hb_015807_080--Hb_104920_010 Hb_000753_140 Hb_000753_140 Hb_015807_080--Hb_000753_140 Hb_005941_020 Hb_005941_020 Hb_015807_080--Hb_005941_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.89729 10.0122 20.279 5.28358 1.74888 2.47244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63258 2.77701 1.34292 3.90645 11.4675

CAGE analysis