Hb_000442_040

Information

Type -
Description -
Location Contig442: 57464-62040
Sequence    

Annotation

kegg
ID rcu:RCOM_0687720
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative
nr
ID XP_012086589.1
description PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
swissprot
ID Q06881
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=accB PE=1 SV=2
trembl
ID B9S484
description Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative OS=Ricinus communis GN=RCOM_0687720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42694: 57450-61974
cDNA
(Sanger)
(ID:Location)		 020_L11.ab1: 57841-61858

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_040 0.0 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
2 Hb_160256_010 0.1323228429 - - -
3 Hb_005217_030 0.1357724239 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
4 Hb_021732_010 0.1379409874 - - biotin carboxylase [Vernicia fordii]
5 Hb_000181_060 0.138810546 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
6 Hb_001488_030 0.1394085643 - - biotin carboxyl carrier protein [Vernicia fordii]
7 Hb_000331_420 0.1432890904 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
8 Hb_169116_010 0.147352602 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
9 Hb_012653_030 0.1506502438 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000284_130 0.1529691683 - - sodium-bile acid cotransporter, putative [Ricinus communis]
11 Hb_000120_990 0.1554114583 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
12 Hb_000194_010 0.1559353408 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
13 Hb_000676_020 0.1596463813 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
14 Hb_001541_110 0.1598822042 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_000105_100 0.1598989612 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
16 Hb_009851_010 0.1627876747 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
17 Hb_012305_100 0.1633328786 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]
18 Hb_002027_320 0.1636805806 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
19 Hb_004324_390 0.1647210505 - - PREDICTED: plastidial pyruvate kinase 2 [Jatropha curcas]
20 Hb_000005_180 0.1656837075 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000442_040 Hb_000442_040 Hb_160256_010 Hb_160256_010 Hb_000442_040--Hb_160256_010 Hb_005217_030 Hb_005217_030 Hb_000442_040--Hb_005217_030 Hb_021732_010 Hb_021732_010 Hb_000442_040--Hb_021732_010 Hb_000181_060 Hb_000181_060 Hb_000442_040--Hb_000181_060 Hb_001488_030 Hb_001488_030 Hb_000442_040--Hb_001488_030 Hb_000331_420 Hb_000331_420 Hb_000442_040--Hb_000331_420 Hb_001195_640 Hb_001195_640 Hb_160256_010--Hb_001195_640 Hb_000920_010 Hb_000920_010 Hb_160256_010--Hb_000920_010 Hb_160256_010--Hb_000181_060 Hb_002284_210 Hb_002284_210 Hb_160256_010--Hb_002284_210 Hb_030545_010 Hb_030545_010 Hb_160256_010--Hb_030545_010 Hb_000140_440 Hb_000140_440 Hb_160256_010--Hb_000140_440 Hb_001430_020 Hb_001430_020 Hb_005217_030--Hb_001430_020 Hb_005217_030--Hb_000181_060 Hb_005217_030--Hb_000140_440 Hb_000320_190 Hb_000320_190 Hb_005217_030--Hb_000320_190 Hb_153553_040 Hb_153553_040 Hb_005217_030--Hb_153553_040 Hb_011476_030 Hb_011476_030 Hb_005217_030--Hb_011476_030 Hb_000284_130 Hb_000284_130 Hb_021732_010--Hb_000284_130 Hb_012305_100 Hb_012305_100 Hb_021732_010--Hb_012305_100 Hb_000003_780 Hb_000003_780 Hb_021732_010--Hb_000003_780 Hb_000802_130 Hb_000802_130 Hb_021732_010--Hb_000802_130 Hb_001541_110 Hb_001541_110 Hb_021732_010--Hb_001541_110 Hb_002027_320 Hb_002027_320 Hb_021732_010--Hb_002027_320 Hb_004994_080 Hb_004994_080 Hb_000181_060--Hb_004994_080 Hb_000181_060--Hb_000284_130 Hb_000194_010 Hb_000194_010 Hb_000181_060--Hb_000194_010 Hb_007263_010 Hb_007263_010 Hb_000181_060--Hb_007263_010 Hb_000181_060--Hb_002027_320 Hb_001623_490 Hb_001623_490 Hb_000181_060--Hb_001623_490 Hb_000122_190 Hb_000122_190 Hb_001488_030--Hb_000122_190 Hb_000005_180 Hb_000005_180 Hb_001488_030--Hb_000005_180 Hb_000035_240 Hb_000035_240 Hb_001488_030--Hb_000035_240 Hb_001488_030--Hb_001541_110 Hb_000049_110 Hb_000049_110 Hb_001488_030--Hb_000049_110 Hb_001587_180 Hb_001587_180 Hb_001488_030--Hb_001587_180 Hb_000331_570 Hb_000331_570 Hb_000331_420--Hb_000331_570 Hb_000189_130 Hb_000189_130 Hb_000331_420--Hb_000189_130 Hb_005214_170 Hb_005214_170 Hb_000331_420--Hb_005214_170 Hb_009851_010 Hb_009851_010 Hb_000331_420--Hb_009851_010 Hb_002871_040 Hb_002871_040 Hb_000331_420--Hb_002871_040 Hb_000152_180 Hb_000152_180 Hb_000331_420--Hb_000152_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8186 9.56131 99.943 35.3276 5.21617 16.8413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.9907 12.959 16.2517 11.6611 49.1004

CAGE analysis