Hb_001102_050

Information

Type -
Description -
Location Contig1102: 43234-46847
Sequence    

Annotation

kegg
ID pmum:103325803
description fatty-acid-binding protein 3
nr
ID XP_012070209.1
description PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
swissprot
ID Q9C8L2
description Fatty-acid-binding protein 3 OS=Arabidopsis thaliana GN=FAP3 PE=1 SV=1
trembl
ID A0A067L5L6
description Chalcone-flavonone isomerase family protein OS=Jatropha curcas GN=JCGZ_04939 PE=3 SV=1
Gene Ontology
ID GO:0005504
description fatty-acid-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03129: 43377-46792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_050 0.0 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
2 Hb_000926_080 0.1042589799 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
3 Hb_002027_320 0.1047330685 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
4 Hb_002871_040 0.108937174 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
5 Hb_001804_090 0.1105569446 - - PREDICTED: uracil phosphoribosyltransferase isoform X1 [Jatropha curcas]
6 Hb_003835_110 0.1129491335 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
7 Hb_000003_780 0.1163143751 - - hexokinase [Manihot esculenta]
8 Hb_000364_170 0.1174404118 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
9 Hb_001541_110 0.1179045121 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_011381_040 0.1189383556 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
11 Hb_007199_020 0.1198921393 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
12 Hb_005946_040 0.1198955352 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
13 Hb_021732_010 0.1208468455 - - biotin carboxylase [Vernicia fordii]
14 Hb_068194_010 0.1226018651 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
15 Hb_002986_090 0.123431873 - - PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_005332_080 0.1239993023 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
17 Hb_000905_120 0.1247119873 - - PREDICTED: uncharacterized protein LOC105628677 [Jatropha curcas]
18 Hb_000676_020 0.1291703248 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
19 Hb_000163_260 0.1292134896 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
20 Hb_000200_300 0.130983358 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]

Gene co-expression network

sample Hb_001102_050 Hb_001102_050 Hb_000926_080 Hb_000926_080 Hb_001102_050--Hb_000926_080 Hb_002027_320 Hb_002027_320 Hb_001102_050--Hb_002027_320 Hb_002871_040 Hb_002871_040 Hb_001102_050--Hb_002871_040 Hb_001804_090 Hb_001804_090 Hb_001102_050--Hb_001804_090 Hb_003835_110 Hb_003835_110 Hb_001102_050--Hb_003835_110 Hb_000003_780 Hb_000003_780 Hb_001102_050--Hb_000003_780 Hb_000200_300 Hb_000200_300 Hb_000926_080--Hb_000200_300 Hb_003266_030 Hb_003266_030 Hb_000926_080--Hb_003266_030 Hb_000086_080 Hb_000086_080 Hb_000926_080--Hb_000086_080 Hb_004965_110 Hb_004965_110 Hb_000926_080--Hb_004965_110 Hb_006907_060 Hb_006907_060 Hb_000926_080--Hb_006907_060 Hb_027506_040 Hb_027506_040 Hb_000926_080--Hb_027506_040 Hb_007263_010 Hb_007263_010 Hb_002027_320--Hb_007263_010 Hb_000392_450 Hb_000392_450 Hb_002027_320--Hb_000392_450 Hb_004994_080 Hb_004994_080 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_011381_040 Hb_011381_040 Hb_002027_320--Hb_011381_040 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060 Hb_002871_040--Hb_003835_110 Hb_017193_010 Hb_017193_010 Hb_002871_040--Hb_017193_010 Hb_002871_040--Hb_011381_040 Hb_000620_020 Hb_000620_020 Hb_002871_040--Hb_000620_020 Hb_002627_040 Hb_002627_040 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080 Hb_000330_090 Hb_000330_090 Hb_001804_090--Hb_000330_090 Hb_146255_020 Hb_146255_020 Hb_001804_090--Hb_146255_020 Hb_007199_020 Hb_007199_020 Hb_001804_090--Hb_007199_020 Hb_001105_170 Hb_001105_170 Hb_001804_090--Hb_001105_170 Hb_001178_010 Hb_001178_010 Hb_001804_090--Hb_001178_010 Hb_002759_190 Hb_002759_190 Hb_001804_090--Hb_002759_190 Hb_003835_110--Hb_011381_040 Hb_019654_050 Hb_019654_050 Hb_003835_110--Hb_019654_050 Hb_003835_110--Hb_002027_320 Hb_006588_190 Hb_006588_190 Hb_003835_110--Hb_006588_190 Hb_003835_110--Hb_017193_010 Hb_002631_240 Hb_002631_240 Hb_000003_780--Hb_002631_240 Hb_005946_040 Hb_005946_040 Hb_000003_780--Hb_005946_040 Hb_002874_180 Hb_002874_180 Hb_000003_780--Hb_002874_180 Hb_007002_020 Hb_007002_020 Hb_000003_780--Hb_007002_020 Hb_001900_140 Hb_001900_140 Hb_000003_780--Hb_001900_140 Hb_001587_180 Hb_001587_180 Hb_000003_780--Hb_001587_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.93266 2.01982 18.3922 6.13987 3.79264 2.74366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.97014 6.22986 4.34197 4.47215 8.73552

CAGE analysis