Hb_003835_110

Information

Type -
Description -
Location Contig3835: 161791-167983
Sequence    

Annotation

kegg
ID rcu:RCOM_0270650
description purine permease, putative
nr
ID XP_012081676.1
description PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
swissprot
ID Q6SZ87
description Nucleobase-ascorbate transporter 11 OS=Arabidopsis thaliana GN=NAT11 PE=2 SV=1
trembl
ID A0A067K0Y3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18707 PE=4 SV=1
Gene Ontology
ID GO:0005886
description nucleobase-ascorbate transporter 11 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38676: 161753-167098 , PASA_asmbl_38677: 167471-167724 , PASA_asmbl_38678: 167783-167970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003835_110 0.0 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
2 Hb_011381_040 0.0650160054 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
3 Hb_002871_040 0.0670144906 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
4 Hb_019654_050 0.0985517118 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
5 Hb_002027_320 0.1016169398 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
6 Hb_006588_190 0.1051287808 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
7 Hb_017193_010 0.1084034451 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
8 Hb_000327_330 0.1103655592 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001799_160 0.110879459 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_001102_050 0.1129491335 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
11 Hb_002627_040 0.1155641215 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
12 Hb_007217_010 0.1156016721 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
13 Hb_000608_390 0.1156335832 - - hypothetical protein B456_010G140700 [Gossypium raimondii]
14 Hb_000926_060 0.1160471663 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000364_170 0.1193646351 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
16 Hb_000029_400 0.1205976995 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
17 Hb_000579_080 0.1223232812 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
18 Hb_000318_220 0.1241428802 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005332_080 0.1258140044 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
20 Hb_000163_260 0.1260071029 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]

Gene co-expression network

sample Hb_003835_110 Hb_003835_110 Hb_011381_040 Hb_011381_040 Hb_003835_110--Hb_011381_040 Hb_002871_040 Hb_002871_040 Hb_003835_110--Hb_002871_040 Hb_019654_050 Hb_019654_050 Hb_003835_110--Hb_019654_050 Hb_002027_320 Hb_002027_320 Hb_003835_110--Hb_002027_320 Hb_006588_190 Hb_006588_190 Hb_003835_110--Hb_006588_190 Hb_017193_010 Hb_017193_010 Hb_003835_110--Hb_017193_010 Hb_011381_040--Hb_006588_190 Hb_000364_170 Hb_000364_170 Hb_011381_040--Hb_000364_170 Hb_011381_040--Hb_002871_040 Hb_000029_400 Hb_000029_400 Hb_011381_040--Hb_000029_400 Hb_011381_040--Hb_002027_320 Hb_002871_040--Hb_017193_010 Hb_000620_020 Hb_000620_020 Hb_002871_040--Hb_000620_020 Hb_002627_040 Hb_002627_040 Hb_002871_040--Hb_002627_040 Hb_000579_080 Hb_000579_080 Hb_002871_040--Hb_000579_080 Hb_001799_160 Hb_001799_160 Hb_019654_050--Hb_001799_160 Hb_000120_890 Hb_000120_890 Hb_019654_050--Hb_000120_890 Hb_003498_100 Hb_003498_100 Hb_019654_050--Hb_003498_100 Hb_019654_050--Hb_011381_040 Hb_002783_220 Hb_002783_220 Hb_019654_050--Hb_002783_220 Hb_007263_010 Hb_007263_010 Hb_002027_320--Hb_007263_010 Hb_000392_450 Hb_000392_450 Hb_002027_320--Hb_000392_450 Hb_004994_080 Hb_004994_080 Hb_002027_320--Hb_004994_080 Hb_011386_050 Hb_011386_050 Hb_002027_320--Hb_011386_050 Hb_000181_060 Hb_000181_060 Hb_002027_320--Hb_000181_060 Hb_000327_330 Hb_000327_330 Hb_006588_190--Hb_000327_330 Hb_000800_020 Hb_000800_020 Hb_006588_190--Hb_000800_020 Hb_007217_010 Hb_007217_010 Hb_006588_190--Hb_007217_010 Hb_000163_260 Hb_000163_260 Hb_006588_190--Hb_000163_260 Hb_001009_140 Hb_001009_140 Hb_006588_190--Hb_001009_140 Hb_172979_010 Hb_172979_010 Hb_017193_010--Hb_172979_010 Hb_101334_020 Hb_101334_020 Hb_017193_010--Hb_101334_020 Hb_001623_500 Hb_001623_500 Hb_017193_010--Hb_001623_500 Hb_017193_010--Hb_000579_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86908 3.14454 17.6488 7.14799 4.5132 1.76665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55418 3.47625 3.18651 4.51 7.40322

CAGE analysis