Hb_007110_010

Information

Type -
Description -
Location Contig7110: 16885-18682
Sequence    

Annotation

kegg
ID rcu:RCOM_0836650
description transcription factor, putative
nr
ID XP_012067659.1
description PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID A0A067KYF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15618 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55294: 16854-18845
cDNA
(Sanger)
(ID:Location)		 030_D20.ab1: 17514-18316

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007110_010 0.0 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
2 Hb_011379_010 0.1581106978 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_002228_080 0.1685151974 - - hypothetical protein JCGZ_12924 [Jatropha curcas]
4 Hb_000107_510 0.1715949635 - - phosphate transporter [Manihot esculenta]
5 Hb_004672_030 0.1831182265 - - proline oxidase [Manihot esculenta]
6 Hb_001004_150 0.1834934359 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
7 Hb_033152_120 0.1911705973 - - PREDICTED: la-related protein 6C [Jatropha curcas]
8 Hb_009111_020 0.1932794613 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
9 Hb_065525_120 0.2024674152 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
10 Hb_001307_110 0.2039238485 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
11 Hb_019837_040 0.2053158627 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
12 Hb_000008_400 0.2066748048 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
13 Hb_154038_020 0.2091286089 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
14 Hb_001153_120 0.2093502304 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
15 Hb_062522_010 0.2094447163 - - -
16 Hb_001904_050 0.2102145549 - - alpha-tubulin 1 [Hevea brasiliensis]
17 Hb_000300_700 0.2103664586 - - PREDICTED: adenylyl-sulfate kinase 3 [Jatropha curcas]
18 Hb_140439_010 0.213813226 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
19 Hb_002909_020 0.216294809 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
20 Hb_169116_010 0.2175456842 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_007110_010 Hb_007110_010 Hb_011379_010 Hb_011379_010 Hb_007110_010--Hb_011379_010 Hb_002228_080 Hb_002228_080 Hb_007110_010--Hb_002228_080 Hb_000107_510 Hb_000107_510 Hb_007110_010--Hb_000107_510 Hb_004672_030 Hb_004672_030 Hb_007110_010--Hb_004672_030 Hb_001004_150 Hb_001004_150 Hb_007110_010--Hb_001004_150 Hb_033152_120 Hb_033152_120 Hb_007110_010--Hb_033152_120 Hb_014834_010 Hb_014834_010 Hb_011379_010--Hb_014834_010 Hb_011379_010--Hb_004672_030 Hb_002836_120 Hb_002836_120 Hb_011379_010--Hb_002836_120 Hb_140439_010 Hb_140439_010 Hb_011379_010--Hb_140439_010 Hb_004162_260 Hb_004162_260 Hb_011379_010--Hb_004162_260 Hb_001486_270 Hb_001486_270 Hb_002228_080--Hb_001486_270 Hb_003589_080 Hb_003589_080 Hb_002228_080--Hb_003589_080 Hb_001597_050 Hb_001597_050 Hb_002228_080--Hb_001597_050 Hb_000157_050 Hb_000157_050 Hb_002228_080--Hb_000157_050 Hb_000173_050 Hb_000173_050 Hb_002228_080--Hb_000173_050 Hb_062522_010 Hb_062522_010 Hb_000107_510--Hb_062522_010 Hb_000167_050 Hb_000167_050 Hb_000107_510--Hb_000167_050 Hb_031527_110 Hb_031527_110 Hb_000107_510--Hb_031527_110 Hb_000365_370 Hb_000365_370 Hb_000107_510--Hb_000365_370 Hb_001904_050 Hb_001904_050 Hb_000107_510--Hb_001904_050 Hb_002174_040 Hb_002174_040 Hb_000107_510--Hb_002174_040 Hb_004128_070 Hb_004128_070 Hb_004672_030--Hb_004128_070 Hb_000525_050 Hb_000525_050 Hb_004672_030--Hb_000525_050 Hb_005846_030 Hb_005846_030 Hb_004672_030--Hb_005846_030 Hb_065525_120 Hb_065525_120 Hb_004672_030--Hb_065525_120 Hb_002936_080 Hb_002936_080 Hb_004672_030--Hb_002936_080 Hb_004346_030 Hb_004346_030 Hb_004672_030--Hb_004346_030 Hb_001153_120 Hb_001153_120 Hb_001004_150--Hb_001153_120 Hb_000331_460 Hb_000331_460 Hb_001004_150--Hb_000331_460 Hb_000310_100 Hb_000310_100 Hb_001004_150--Hb_000310_100 Hb_001454_100 Hb_001454_100 Hb_001004_150--Hb_001454_100 Hb_012244_010 Hb_012244_010 Hb_001004_150--Hb_012244_010 Hb_000377_150 Hb_000377_150 Hb_001004_150--Hb_000377_150 Hb_007441_080 Hb_007441_080 Hb_033152_120--Hb_007441_080 Hb_006889_020 Hb_006889_020 Hb_033152_120--Hb_006889_020 Hb_033152_120--Hb_001904_050 Hb_000256_080 Hb_000256_080 Hb_033152_120--Hb_000256_080 Hb_002007_320 Hb_002007_320 Hb_033152_120--Hb_002007_320 Hb_003549_080 Hb_003549_080 Hb_033152_120--Hb_003549_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00272 1.10467 16.7894 15.8928 0.161557 0.779673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4626 8.64574 13.8946 0.778205 10.494

CAGE analysis