Hb_006889_020

Information

Type -
Description -
Location Contig6889: 28382-34760
Sequence    

Annotation

kegg
ID rcu:RCOM_0476750
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002523757.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID O04379
description Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1
trembl
ID B9SCN8
description Protein argonaute OS=Ricinus communis GN=RCOM_0476750 PE=3 SV=1
Gene Ontology
ID GO:0003676
description argonaute family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54148: 28358-34753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006889_020 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_033152_120 0.1660118315 - - PREDICTED: la-related protein 6C [Jatropha curcas]
3 Hb_006445_020 0.1767381255 - - hypothetical protein L484_026741 [Morus notabilis]
4 Hb_001377_530 0.1792282399 - - NC domain-containing family protein [Populus trichocarpa]
5 Hb_012804_020 0.1856867338 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
6 Hb_000189_170 0.186385086 - - calcium ion binding protein, putative [Ricinus communis]
7 Hb_001408_170 0.1870915431 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
8 Hb_010172_110 0.189616312 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_002641_120 0.1921628864 - - PREDICTED: calmodulin [Jatropha curcas]
10 Hb_005622_020 0.1939775183 - - PREDICTED: DCC family protein At1g52590, chloroplastic [Jatropha curcas]
11 Hb_008725_080 0.1953470744 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
12 Hb_000991_020 0.1981453291 - - amino acid transporter, putative [Ricinus communis]
13 Hb_000108_240 0.1985257392 - - hypothetical protein Csa_1G600150 [Cucumis sativus]
14 Hb_003055_110 0.1993828427 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002686_160 0.200187789 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Populus euphratica]
16 Hb_001198_080 0.2008854184 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
17 Hb_004650_030 0.2010676185 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
18 Hb_133799_010 0.2045781459 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005470_030 0.2054262124 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
20 Hb_000193_340 0.2060695658 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006889_020 Hb_006889_020 Hb_033152_120 Hb_033152_120 Hb_006889_020--Hb_033152_120 Hb_006445_020 Hb_006445_020 Hb_006889_020--Hb_006445_020 Hb_001377_530 Hb_001377_530 Hb_006889_020--Hb_001377_530 Hb_012804_020 Hb_012804_020 Hb_006889_020--Hb_012804_020 Hb_000189_170 Hb_000189_170 Hb_006889_020--Hb_000189_170 Hb_001408_170 Hb_001408_170 Hb_006889_020--Hb_001408_170 Hb_007441_080 Hb_007441_080 Hb_033152_120--Hb_007441_080 Hb_001904_050 Hb_001904_050 Hb_033152_120--Hb_001904_050 Hb_000256_080 Hb_000256_080 Hb_033152_120--Hb_000256_080 Hb_002007_320 Hb_002007_320 Hb_033152_120--Hb_002007_320 Hb_003549_080 Hb_003549_080 Hb_033152_120--Hb_003549_080 Hb_068194_010 Hb_068194_010 Hb_006445_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_006445_020--Hb_027506_040 Hb_002205_140 Hb_002205_140 Hb_006445_020--Hb_002205_140 Hb_000676_020 Hb_000676_020 Hb_006445_020--Hb_000676_020 Hb_003602_060 Hb_003602_060 Hb_006445_020--Hb_003602_060 Hb_118282_010 Hb_118282_010 Hb_006445_020--Hb_118282_010 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_002641_120 Hb_002641_120 Hb_001377_530--Hb_002641_120 Hb_003398_040 Hb_003398_040 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_003299_020 Hb_003299_020 Hb_001377_530--Hb_003299_020 Hb_001377_530--Hb_001408_170 Hb_002686_160 Hb_002686_160 Hb_012804_020--Hb_002686_160 Hb_001198_080 Hb_001198_080 Hb_012804_020--Hb_001198_080 Hb_003408_060 Hb_003408_060 Hb_012804_020--Hb_003408_060 Hb_061256_010 Hb_061256_010 Hb_012804_020--Hb_061256_010 Hb_082655_010 Hb_082655_010 Hb_012804_020--Hb_082655_010 Hb_010172_110 Hb_010172_110 Hb_000189_170--Hb_010172_110 Hb_003055_110 Hb_003055_110 Hb_000189_170--Hb_003055_110 Hb_083940_010 Hb_083940_010 Hb_000189_170--Hb_083940_010 Hb_007002_040 Hb_007002_040 Hb_000189_170--Hb_007002_040 Hb_114310_100 Hb_114310_100 Hb_000189_170--Hb_114310_100 Hb_001221_330 Hb_001221_330 Hb_000189_170--Hb_001221_330 Hb_004052_100 Hb_004052_100 Hb_001408_170--Hb_004052_100 Hb_001268_160 Hb_001268_160 Hb_001408_170--Hb_001268_160 Hb_001401_040 Hb_001401_040 Hb_001408_170--Hb_001401_040 Hb_010381_040 Hb_010381_040 Hb_001408_170--Hb_010381_040 Hb_011174_040 Hb_011174_040 Hb_001408_170--Hb_011174_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.05367 15.1818 82.2381 54.2318 0.299124 0.417239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.2362 11.9886 28.0644 12.7695 37.7933

CAGE analysis