Hb_061256_010

Information

Type -
Description -
Location Contig61256: 7128-12416
Sequence    

Annotation

kegg
ID rcu:RCOM_1601220
description bromodomain-containing protein (EC:2.3.1.48)
nr
ID XP_012073643.1
description PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
swissprot
ID Q9ULD4
description Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens GN=BRPF3 PE=1 SV=2
trembl
ID A0A067KY78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08075 PE=4 SV=1
Gene Ontology
ID GO:0016746
description dna-binding bromodomain-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51058: 7532-12378 , PASA_asmbl_51060: 7532-7797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061256_010 0.0 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
2 Hb_006438_020 0.0787981335 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
3 Hb_000235_070 0.0894198935 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
4 Hb_001799_160 0.0941787688 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000193_260 0.0954672178 - - PREDICTED: protein NEN1 [Jatropha curcas]
6 Hb_001729_020 0.0964767334 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
7 Hb_021576_150 0.0970331497 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
8 Hb_000086_270 0.0971563901 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
9 Hb_001269_620 0.0986627762 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
10 Hb_000137_010 0.1028120751 - - PREDICTED: uncharacterized protein LOC105644349 [Jatropha curcas]
11 Hb_000787_080 0.1059347597 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
12 Hb_000476_060 0.1064562577 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
13 Hb_002534_130 0.1080519778 - - membrane associated ring finger 1,8, putative [Ricinus communis]
14 Hb_000680_120 0.1088908789 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
15 Hb_000120_890 0.10974164 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
16 Hb_002304_050 0.1097882336 - - pyruvate kinase, putative [Ricinus communis]
17 Hb_002445_030 0.11202738 - - hypothetical protein JCGZ_12656 [Jatropha curcas]
18 Hb_013726_050 0.1128583608 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
19 Hb_000979_140 0.1128632842 - - kinase family protein [Populus trichocarpa]
20 Hb_000788_030 0.112907415 - - PREDICTED: dynamin-2A [Jatropha curcas]

Gene co-expression network

sample Hb_061256_010 Hb_061256_010 Hb_006438_020 Hb_006438_020 Hb_061256_010--Hb_006438_020 Hb_000235_070 Hb_000235_070 Hb_061256_010--Hb_000235_070 Hb_001799_160 Hb_001799_160 Hb_061256_010--Hb_001799_160 Hb_000193_260 Hb_000193_260 Hb_061256_010--Hb_000193_260 Hb_001729_020 Hb_001729_020 Hb_061256_010--Hb_001729_020 Hb_021576_150 Hb_021576_150 Hb_061256_010--Hb_021576_150 Hb_012633_050 Hb_012633_050 Hb_006438_020--Hb_012633_050 Hb_002445_030 Hb_002445_030 Hb_006438_020--Hb_002445_030 Hb_002687_180 Hb_002687_180 Hb_006438_020--Hb_002687_180 Hb_011716_010 Hb_011716_010 Hb_006438_020--Hb_011716_010 Hb_021596_020 Hb_021596_020 Hb_006438_020--Hb_021596_020 Hb_001269_620 Hb_001269_620 Hb_000235_070--Hb_001269_620 Hb_005000_080 Hb_005000_080 Hb_000235_070--Hb_005000_080 Hb_027506_040 Hb_027506_040 Hb_000235_070--Hb_027506_040 Hb_015967_030 Hb_015967_030 Hb_000235_070--Hb_015967_030 Hb_000088_260 Hb_000088_260 Hb_000235_070--Hb_000088_260 Hb_000318_220 Hb_000318_220 Hb_001799_160--Hb_000318_220 Hb_003498_100 Hb_003498_100 Hb_001799_160--Hb_003498_100 Hb_000120_890 Hb_000120_890 Hb_001799_160--Hb_000120_890 Hb_001504_010 Hb_001504_010 Hb_001799_160--Hb_001504_010 Hb_007483_070 Hb_007483_070 Hb_001799_160--Hb_007483_070 Hb_001053_190 Hb_001053_190 Hb_001799_160--Hb_001053_190 Hb_002534_130 Hb_002534_130 Hb_000193_260--Hb_002534_130 Hb_026198_010 Hb_026198_010 Hb_000193_260--Hb_026198_010 Hb_000009_520 Hb_000009_520 Hb_000193_260--Hb_000009_520 Hb_002693_030 Hb_002693_030 Hb_000193_260--Hb_002693_030 Hb_001147_050 Hb_001147_050 Hb_000193_260--Hb_001147_050 Hb_000979_140 Hb_000979_140 Hb_001729_020--Hb_000979_140 Hb_002686_150 Hb_002686_150 Hb_001729_020--Hb_002686_150 Hb_000711_010 Hb_000711_010 Hb_001729_020--Hb_000711_010 Hb_002349_030 Hb_002349_030 Hb_001729_020--Hb_002349_030 Hb_003428_090 Hb_003428_090 Hb_001729_020--Hb_003428_090 Hb_002965_050 Hb_002965_050 Hb_001729_020--Hb_002965_050 Hb_000003_680 Hb_000003_680 Hb_021576_150--Hb_000003_680 Hb_021576_150--Hb_001799_160 Hb_001191_080 Hb_001191_080 Hb_021576_150--Hb_001191_080 Hb_012286_020 Hb_012286_020 Hb_021576_150--Hb_012286_020 Hb_000566_050 Hb_000566_050 Hb_021576_150--Hb_000566_050 Hb_000787_080 Hb_000787_080 Hb_021576_150--Hb_000787_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12526 9.8038 19.559 10.8108 2.59154 2.59043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51128 4.26263 7.21958 7.00972 9.83204

CAGE analysis