Hb_001635_010

Information

Type -
Description -
Location Contig1635: 14439-21132
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14925: 13988-14208 , PASA_asmbl_14927: 16974-17923 , PASA_asmbl_14928: 18330-19159 , PASA_asmbl_14929: 20483-21419
cDNA
(Sanger)
(ID:Location)		 005_C08r.ab1: 20895-21255

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_010 0.0 - - -
2 Hb_000157_050 0.1659059848 - - conserved hypothetical protein [Ricinus communis]
3 Hb_017002_010 0.1742344241 - - PREDICTED: expansin-A15-like [Jatropha curcas]
4 Hb_014720_100 0.1889661433 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
5 Hb_002316_010 0.189421735 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
6 Hb_000258_060 0.1982834509 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000345_060 0.2035469797 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
8 Hb_001989_100 0.2081438586 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
9 Hb_007416_100 0.2100664502 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
10 Hb_178968_040 0.2141248498 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008695_220 0.2194216192 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
12 Hb_007311_050 0.21960208 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000217_010 0.2228923994 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
14 Hb_000210_100 0.2233621437 - - pepsin A, putative [Ricinus communis]
15 Hb_001157_210 0.2242680829 - - hypothetical protein CISIN_1g038260mg [Citrus sinensis]
16 Hb_004079_050 0.2260507226 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
17 Hb_000496_110 0.2273084776 - - PREDICTED: uncharacterized protein LOC105650214 [Jatropha curcas]
18 Hb_000028_260 0.2303913756 - - hypothetical protein glysoja_041948 [Glycine soja]
19 Hb_147745_010 0.2315487572 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
20 Hb_003020_200 0.232091233 - - PREDICTED: uncharacterized protein LOC105131117 [Populus euphratica]

Gene co-expression network

sample Hb_001635_010 Hb_001635_010 Hb_000157_050 Hb_000157_050 Hb_001635_010--Hb_000157_050 Hb_017002_010 Hb_017002_010 Hb_001635_010--Hb_017002_010 Hb_014720_100 Hb_014720_100 Hb_001635_010--Hb_014720_100 Hb_002316_010 Hb_002316_010 Hb_001635_010--Hb_002316_010 Hb_000258_060 Hb_000258_060 Hb_001635_010--Hb_000258_060 Hb_000345_060 Hb_000345_060 Hb_001635_010--Hb_000345_060 Hb_000028_260 Hb_000028_260 Hb_000157_050--Hb_000028_260 Hb_001597_050 Hb_001597_050 Hb_000157_050--Hb_001597_050 Hb_178968_040 Hb_178968_040 Hb_000157_050--Hb_178968_040 Hb_002228_080 Hb_002228_080 Hb_000157_050--Hb_002228_080 Hb_001486_270 Hb_001486_270 Hb_000157_050--Hb_001486_270 Hb_017002_010--Hb_014720_100 Hb_008695_220 Hb_008695_220 Hb_017002_010--Hb_008695_220 Hb_017002_010--Hb_178968_040 Hb_007574_040 Hb_007574_040 Hb_017002_010--Hb_007574_040 Hb_004079_050 Hb_004079_050 Hb_017002_010--Hb_004079_050 Hb_014720_100--Hb_178968_040 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010 Hb_012565_010 Hb_012565_010 Hb_002316_010--Hb_012565_010 Hb_133279_010 Hb_133279_010 Hb_002316_010--Hb_133279_010 Hb_019863_100 Hb_019863_100 Hb_002316_010--Hb_019863_100 Hb_002193_070 Hb_002193_070 Hb_002316_010--Hb_002193_070 Hb_002316_010--Hb_000157_050 Hb_000258_060--Hb_008695_220 Hb_003894_020 Hb_003894_020 Hb_000258_060--Hb_003894_020 Hb_001989_100 Hb_001989_100 Hb_000258_060--Hb_001989_100 Hb_000796_020 Hb_000796_020 Hb_000258_060--Hb_000796_020 Hb_000258_060--Hb_019863_100 Hb_003906_020 Hb_003906_020 Hb_000345_060--Hb_003906_020 Hb_001157_210 Hb_001157_210 Hb_000345_060--Hb_001157_210 Hb_000179_120 Hb_000179_120 Hb_000345_060--Hb_000179_120 Hb_000345_060--Hb_014720_100 Hb_000367_110 Hb_000367_110 Hb_000345_060--Hb_000367_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0981922 0.0464759 0.455448 5.23249 0.049625 0.0880917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.561237 0.489999 0.624377 0.0382386 0.770944

CAGE analysis