Hb_178968_040

Information

Type -
Description -
Location Contig178968: 25106-25387
Sequence    

Annotation

kegg
ID rcu:RCOM_1442830
description hypothetical protein
nr
ID XP_002512767.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGQ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442830 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17251: 24864-27090
cDNA
(Sanger)
(ID:Location)		 004_L06.ab1: 24952-27090 , 017_E24.ab1: 24952-27090 , 017_N02.ab1: 24966-27053

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_014720_100 0.1267000703 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
3 Hb_017002_010 0.1632258275 - - PREDICTED: expansin-A15-like [Jatropha curcas]
4 Hb_004079_050 0.1851057468 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
5 Hb_002686_260 0.1902972391 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
6 Hb_000345_080 0.1918749877 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
7 Hb_004125_070 0.2072442351 - - Glycolipid transfer protein, putative [Ricinus communis]
8 Hb_034726_010 0.2116743899 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_000028_260 0.2127093807 - - hypothetical protein glysoja_041948 [Glycine soja]
10 Hb_000157_050 0.2133406138 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001635_010 0.2141248498 - - -
12 Hb_001247_030 0.2141499289 - - -
13 Hb_008695_220 0.215006921 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
14 Hb_030992_010 0.2169056891 - - acetylornithine aminotransferase, putative [Ricinus communis]
15 Hb_001597_050 0.2192470626 - - -
16 Hb_000027_210 0.2211592312 - - Os01g0689300, partial [Oryza sativa Japonica Group]
17 Hb_002498_260 0.2241701246 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
18 Hb_008185_020 0.224373917 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
19 Hb_000796_020 0.2266271399 - - ADP-ribosylation factor [Phaseolus vulgaris]
20 Hb_032972_010 0.2271366874 - - Glycolipid transfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_178968_040 Hb_178968_040 Hb_014720_100 Hb_014720_100 Hb_178968_040--Hb_014720_100 Hb_017002_010 Hb_017002_010 Hb_178968_040--Hb_017002_010 Hb_004079_050 Hb_004079_050 Hb_178968_040--Hb_004079_050 Hb_002686_260 Hb_002686_260 Hb_178968_040--Hb_002686_260 Hb_000345_080 Hb_000345_080 Hb_178968_040--Hb_000345_080 Hb_004125_070 Hb_004125_070 Hb_178968_040--Hb_004125_070 Hb_014720_100--Hb_017002_010 Hb_008695_220 Hb_008695_220 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_014720_100--Hb_002686_260 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010 Hb_017002_010--Hb_008695_220 Hb_007574_040 Hb_007574_040 Hb_017002_010--Hb_007574_040 Hb_001635_010 Hb_001635_010 Hb_017002_010--Hb_001635_010 Hb_017002_010--Hb_004079_050 Hb_001247_030 Hb_001247_030 Hb_004079_050--Hb_001247_030 Hb_006634_110 Hb_006634_110 Hb_004079_050--Hb_006634_110 Hb_122636_010 Hb_122636_010 Hb_004079_050--Hb_122636_010 Hb_188313_010 Hb_188313_010 Hb_004079_050--Hb_188313_010 Hb_005332_040 Hb_005332_040 Hb_002686_260--Hb_005332_040 Hb_001922_030 Hb_001922_030 Hb_002686_260--Hb_001922_030 Hb_002097_140 Hb_002097_140 Hb_002686_260--Hb_002097_140 Hb_005408_070 Hb_005408_070 Hb_002686_260--Hb_005408_070 Hb_123301_010 Hb_123301_010 Hb_002686_260--Hb_123301_010 Hb_000742_030 Hb_000742_030 Hb_000345_080--Hb_000742_030 Hb_020805_140 Hb_020805_140 Hb_000345_080--Hb_020805_140 Hb_001584_240 Hb_001584_240 Hb_000345_080--Hb_001584_240 Hb_000175_260 Hb_000175_260 Hb_000345_080--Hb_000175_260 Hb_000294_050 Hb_000294_050 Hb_000345_080--Hb_000294_050 Hb_003304_110 Hb_003304_110 Hb_000345_080--Hb_003304_110 Hb_184541_010 Hb_184541_010 Hb_004125_070--Hb_184541_010 Hb_004125_070--Hb_001247_030 Hb_011918_010 Hb_011918_010 Hb_004125_070--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_004125_070--Hb_008185_020 Hb_004125_070--Hb_188313_010 Hb_009083_030 Hb_009083_030 Hb_004125_070--Hb_009083_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53572 1.78264 14.4804 97.8661 0.178128 5.70561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4806 14.5827 3.33967 8.74064 9.80494

CAGE analysis