Hb_000179_120

Information

Type -
Description -
Location Contig179: 103456-104610
Sequence    

Annotation

kegg
ID rcu:RCOM_1046000
description hypothetical protein
nr
ID XP_012077017.1
description PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07459 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_120 0.0 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
2 Hb_000217_010 0.2193759352 - - hypothetical protein POPTR_0341s00210g [Populus trichocarpa]
3 Hb_034299_070 0.226241307 - - actin binding protein, putative [Ricinus communis]
4 Hb_000345_060 0.2320371844 - - PREDICTED: REF/SRPP-like protein At3g05500 [Jatropha curcas]
5 Hb_000483_400 0.2387323934 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
6 Hb_002572_030 0.2423688018 - - PREDICTED: diacylglycerol kinase theta [Jatropha curcas]
7 Hb_023301_010 0.2434071134 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
8 Hb_001638_180 0.2441374645 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
9 Hb_175933_010 0.2502250658 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
10 Hb_000922_120 0.2506078351 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
11 Hb_000028_260 0.251709823 - - hypothetical protein glysoja_041948 [Glycine soja]
12 Hb_009178_050 0.2643762693 - - Elongation factor 1-alpha, putative [Ricinus communis]
13 Hb_001635_010 0.2647300771 - - -
14 Hb_007120_040 0.2675233457 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001205_160 0.2705183443 - - hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
16 Hb_054127_060 0.2717507866 - - hypothetical protein POPTR_0004s09330g [Populus trichocarpa]
17 Hb_012022_130 0.273974654 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
18 Hb_001486_270 0.2747855271 - - Ann10 [Manihot esculenta]
19 Hb_001969_020 0.275153169 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
20 Hb_000260_280 0.2761649756 - - auxin:hydrogen symporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000179_120 Hb_000179_120 Hb_000217_010 Hb_000217_010 Hb_000179_120--Hb_000217_010 Hb_034299_070 Hb_034299_070 Hb_000179_120--Hb_034299_070 Hb_000345_060 Hb_000345_060 Hb_000179_120--Hb_000345_060 Hb_000483_400 Hb_000483_400 Hb_000179_120--Hb_000483_400 Hb_002572_030 Hb_002572_030 Hb_000179_120--Hb_002572_030 Hb_023301_010 Hb_023301_010 Hb_000179_120--Hb_023301_010 Hb_000240_100 Hb_000240_100 Hb_000217_010--Hb_000240_100 Hb_000260_280 Hb_000260_280 Hb_000217_010--Hb_000260_280 Hb_000192_020 Hb_000192_020 Hb_000217_010--Hb_000192_020 Hb_175933_010 Hb_175933_010 Hb_000217_010--Hb_175933_010 Hb_029920_020 Hb_029920_020 Hb_000217_010--Hb_029920_020 Hb_032972_010 Hb_032972_010 Hb_000217_010--Hb_032972_010 Hb_131684_010 Hb_131684_010 Hb_034299_070--Hb_131684_010 Hb_004453_070 Hb_004453_070 Hb_034299_070--Hb_004453_070 Hb_000796_020 Hb_000796_020 Hb_034299_070--Hb_000796_020 Hb_104571_010 Hb_104571_010 Hb_034299_070--Hb_104571_010 Hb_002582_080 Hb_002582_080 Hb_034299_070--Hb_002582_080 Hb_004162_060 Hb_004162_060 Hb_034299_070--Hb_004162_060 Hb_003906_020 Hb_003906_020 Hb_000345_060--Hb_003906_020 Hb_001635_010 Hb_001635_010 Hb_000345_060--Hb_001635_010 Hb_001157_210 Hb_001157_210 Hb_000345_060--Hb_001157_210 Hb_014720_100 Hb_014720_100 Hb_000345_060--Hb_014720_100 Hb_000367_110 Hb_000367_110 Hb_000345_060--Hb_000367_110 Hb_000483_400--Hb_000796_020 Hb_000240_120 Hb_000240_120 Hb_000483_400--Hb_000240_120 Hb_000483_400--Hb_175933_010 Hb_000483_400--Hb_004453_070 Hb_000683_100 Hb_000683_100 Hb_000483_400--Hb_000683_100 Hb_000217_020 Hb_000217_020 Hb_000483_400--Hb_000217_020 Hb_002157_040 Hb_002157_040 Hb_002572_030--Hb_002157_040 Hb_001486_270 Hb_001486_270 Hb_002572_030--Hb_001486_270 Hb_003777_170 Hb_003777_170 Hb_002572_030--Hb_003777_170 Hb_124996_010 Hb_124996_010 Hb_002572_030--Hb_124996_010 Hb_000032_050 Hb_000032_050 Hb_002572_030--Hb_000032_050 Hb_000922_120 Hb_000922_120 Hb_023301_010--Hb_000922_120 Hb_012022_130 Hb_012022_130 Hb_023301_010--Hb_012022_130 Hb_000210_100 Hb_000210_100 Hb_023301_010--Hb_000210_100 Hb_001454_100 Hb_001454_100 Hb_023301_010--Hb_001454_100 Hb_023301_010--Hb_000217_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.515663 0.352645 0.243851 12.2015 0.10694 0.431966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03525 1.83764 2.41916 0.321458 0.206987

CAGE analysis