Hb_034299_070

Information

Type -
Description -
Location Contig34299: 53719-56424
Sequence    

Annotation

kegg
ID rcu:RCOM_0699770
description actin binding protein, putative
nr
ID XP_002520202.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID O04532
description Formin-like protein 8 OS=Arabidopsis thaliana GN=FH8 PE=1 SV=1
trembl
ID B9S2I3
description Formin-like protein OS=Ricinus communis GN=RCOM_0699770 PE=3 SV=1
Gene Ontology
ID GO:0005886
description formin-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35815: 54991-55495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034299_070 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_131684_010 0.174487499 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004453_070 0.1781828656 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
4 Hb_000796_020 0.2039762371 - - ADP-ribosylation factor [Phaseolus vulgaris]
5 Hb_104571_010 0.2081109306 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
6 Hb_002582_080 0.2112045836 - - -
7 Hb_004162_060 0.2114151842 - - unnamed protein product [Vitis vinifera]
8 Hb_000483_400 0.211458595 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
9 Hb_000260_280 0.2128880953 - - auxin:hydrogen symporter, putative [Ricinus communis]
10 Hb_004899_310 0.2134040036 - - conserved hypothetical protein [Ricinus communis]
11 Hb_032972_010 0.2175823629 - - Glycolipid transfer protein, putative [Ricinus communis]
12 Hb_000311_040 0.2196167903 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
13 Hb_000179_120 0.226241307 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
14 Hb_004125_070 0.2281988904 - - Glycolipid transfer protein, putative [Ricinus communis]
15 Hb_000028_260 0.2286883896 - - hypothetical protein glysoja_041948 [Glycine soja]
16 Hb_001638_180 0.2334492748 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
17 Hb_014720_100 0.2342277573 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
18 Hb_002686_260 0.2345951492 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
19 Hb_006569_060 0.2357028504 - - plasma membrane intrinsic protein PIP2;3 [Hevea brasiliensis]
20 Hb_003894_020 0.2393917533 - - plant sec1, putative [Ricinus communis]

Gene co-expression network

sample Hb_034299_070 Hb_034299_070 Hb_131684_010 Hb_131684_010 Hb_034299_070--Hb_131684_010 Hb_004453_070 Hb_004453_070 Hb_034299_070--Hb_004453_070 Hb_000796_020 Hb_000796_020 Hb_034299_070--Hb_000796_020 Hb_104571_010 Hb_104571_010 Hb_034299_070--Hb_104571_010 Hb_002582_080 Hb_002582_080 Hb_034299_070--Hb_002582_080 Hb_004162_060 Hb_004162_060 Hb_034299_070--Hb_004162_060 Hb_131684_010--Hb_000796_020 Hb_131684_010--Hb_004453_070 Hb_131684_010--Hb_104571_010 Hb_003938_160 Hb_003938_160 Hb_131684_010--Hb_003938_160 Hb_001217_010 Hb_001217_010 Hb_131684_010--Hb_001217_010 Hb_001195_410 Hb_001195_410 Hb_004453_070--Hb_001195_410 Hb_004453_070--Hb_000796_020 Hb_006569_060 Hb_006569_060 Hb_004453_070--Hb_006569_060 Hb_000776_060 Hb_000776_060 Hb_004453_070--Hb_000776_060 Hb_012362_030 Hb_012362_030 Hb_004453_070--Hb_012362_030 Hb_000062_090 Hb_000062_090 Hb_004453_070--Hb_000062_090 Hb_000683_100 Hb_000683_100 Hb_000796_020--Hb_000683_100 Hb_000796_020--Hb_000776_060 Hb_030992_010 Hb_030992_010 Hb_000796_020--Hb_030992_010 Hb_122636_010 Hb_122636_010 Hb_000796_020--Hb_122636_010 Hb_000796_020--Hb_000062_090 Hb_003207_150 Hb_003207_150 Hb_104571_010--Hb_003207_150 Hb_000300_230 Hb_000300_230 Hb_104571_010--Hb_000300_230 Hb_000177_110 Hb_000177_110 Hb_104571_010--Hb_000177_110 Hb_003875_010 Hb_003875_010 Hb_104571_010--Hb_003875_010 Hb_002217_500 Hb_002217_500 Hb_104571_010--Hb_002217_500 Hb_000805_140 Hb_000805_140 Hb_104571_010--Hb_000805_140 Hb_000302_110 Hb_000302_110 Hb_002582_080--Hb_000302_110 Hb_004925_030 Hb_004925_030 Hb_002582_080--Hb_004925_030 Hb_000302_100 Hb_000302_100 Hb_002582_080--Hb_000302_100 Hb_011918_010 Hb_011918_010 Hb_002582_080--Hb_011918_010 Hb_001329_020 Hb_001329_020 Hb_002582_080--Hb_001329_020 Hb_069355_010 Hb_069355_010 Hb_004162_060--Hb_069355_010 Hb_001481_130 Hb_001481_130 Hb_004162_060--Hb_001481_130 Hb_001898_140 Hb_001898_140 Hb_004162_060--Hb_001898_140 Hb_003878_050 Hb_003878_050 Hb_004162_060--Hb_003878_050 Hb_126757_010 Hb_126757_010 Hb_004162_060--Hb_126757_010 Hb_000210_100 Hb_000210_100 Hb_004162_060--Hb_000210_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.550281 0.909047 0.410083 7.82457 0.0705216 0.0965438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.944325 1.07482 1.39252 0.884975 0.338791

CAGE analysis