Hb_012022_130

Information

Type -
Description -
Location Contig12022: 184812-188193
Sequence    

Annotation

kegg
ID rcu:RCOM_0643910
description Vacuolar cation/proton exchanger 1a, putative
nr
ID XP_002528100.1
description Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
swissprot
ID Q93Z81
description Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1
trembl
ID B9SQ31
description Vacuolar cation/proton exchanger 1a, putative OS=Ricinus communis GN=RCOM_0643910 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar cation proton exchanger 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06280: 187302-188124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012022_130 0.0 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
2 Hb_000922_120 0.118233615 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
3 Hb_023301_010 0.141912053 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
4 Hb_144484_010 0.1465427699 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_001712_040 0.2040800602 - - Calmodulin, putative [Ricinus communis]
6 Hb_001504_140 0.2229750266 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
7 Hb_000138_170 0.2546771468 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
8 Hb_002272_280 0.2550150624 - - phosphoglycerate mutase, putative [Ricinus communis]
9 Hb_001635_020 0.2582298277 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
10 Hb_011472_010 0.2620174948 - - PREDICTED: protein yippee-like [Jatropha curcas]
11 Hb_024154_020 0.2630790053 - - polyphenol oxidase [Hevea brasiliensis]
12 Hb_001454_100 0.2732897809 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
13 Hb_000179_120 0.273974654 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
14 Hb_003589_080 0.2765147946 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
15 Hb_002836_080 0.2773932116 - - -
16 Hb_000042_220 0.2787025053 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
17 Hb_007120_040 0.2811025291 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002843_080 0.2815362831 - - SAUR family protein [Theobroma cacao]
19 Hb_012163_020 0.294444404 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
20 Hb_001377_420 0.2971627019 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012022_130 Hb_012022_130 Hb_000922_120 Hb_000922_120 Hb_012022_130--Hb_000922_120 Hb_023301_010 Hb_023301_010 Hb_012022_130--Hb_023301_010 Hb_144484_010 Hb_144484_010 Hb_012022_130--Hb_144484_010 Hb_001712_040 Hb_001712_040 Hb_012022_130--Hb_001712_040 Hb_001504_140 Hb_001504_140 Hb_012022_130--Hb_001504_140 Hb_000138_170 Hb_000138_170 Hb_012022_130--Hb_000138_170 Hb_000922_120--Hb_023301_010 Hb_001454_100 Hb_001454_100 Hb_000922_120--Hb_001454_100 Hb_000922_120--Hb_144484_010 Hb_000922_120--Hb_001712_040 Hb_011472_010 Hb_011472_010 Hb_000922_120--Hb_011472_010 Hb_000210_100 Hb_000210_100 Hb_023301_010--Hb_000210_100 Hb_023301_010--Hb_001454_100 Hb_000179_120 Hb_000179_120 Hb_023301_010--Hb_000179_120 Hb_000217_010 Hb_000217_010 Hb_023301_010--Hb_000217_010 Hb_144484_010--Hb_001504_140 Hb_001635_020 Hb_001635_020 Hb_144484_010--Hb_001635_020 Hb_144484_010--Hb_001712_040 Hb_000167_030 Hb_000167_030 Hb_144484_010--Hb_000167_030 Hb_002843_080 Hb_002843_080 Hb_001712_040--Hb_002843_080 Hb_002272_280 Hb_002272_280 Hb_001712_040--Hb_002272_280 Hb_001712_040--Hb_001504_140 Hb_005671_020 Hb_005671_020 Hb_001504_140--Hb_005671_020 Hb_001504_140--Hb_001635_020 Hb_002473_110 Hb_002473_110 Hb_001504_140--Hb_002473_110 Hb_001504_140--Hb_011472_010 Hb_158092_010 Hb_158092_010 Hb_001504_140--Hb_158092_010 Hb_000243_080 Hb_000243_080 Hb_000138_170--Hb_000243_080 Hb_000826_090 Hb_000826_090 Hb_000138_170--Hb_000826_090 Hb_006442_020 Hb_006442_020 Hb_000138_170--Hb_006442_020 Hb_003894_080 Hb_003894_080 Hb_000138_170--Hb_003894_080 Hb_111985_110 Hb_111985_110 Hb_000138_170--Hb_111985_110 Hb_019516_080 Hb_019516_080 Hb_000138_170--Hb_019516_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.22162 0.129688 0.823255 30.5463 0.181347 0.283954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2032 12.94 25.8156 0.767566 2.55439

CAGE analysis