Hb_002843_080

Information

Type -
Description -
Location Contig2843: 65705-66082
Sequence    

Annotation

kegg
ID tcc:TCM_015490
description SAUR family protein
nr
ID XP_007039174.1
description SAUR family protein [Theobroma cacao]
swissprot
ID Q9ZUZ3
description Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana GN=SAUR32 PE=2 SV=1
trembl
ID A0A061G1I7
description SAUR family protein OS=Theobroma cacao GN=TCM_015490 PE=4 SV=1
Gene Ontology
ID GO:0009733
description auxin-induced protein x15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29752: 65453-66362
cDNA
(Sanger)
(ID:Location)		 031_J17.ab1: 65455-66153

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_080 0.0 - - SAUR family protein [Theobroma cacao]
2 Hb_000539_030 0.1763792536 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
3 Hb_006538_140 0.1894926451 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
4 Hb_002260_030 0.1990970751 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
5 Hb_024154_020 0.2026988685 - - polyphenol oxidase [Hevea brasiliensis]
6 Hb_000914_170 0.2070252557 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
7 Hb_000260_210 0.2081050154 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001712_040 0.2182223034 - - Calmodulin, putative [Ricinus communis]
9 Hb_001587_070 0.2219164328 desease resistance Gene Name: NB-ARC Nbs-lrr resistance protein, putative [Theobroma cacao]
10 Hb_158092_010 0.224496135 - - CYP51 [Hevea brasiliensis]
11 Hb_003687_150 0.226419508 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
12 Hb_025964_050 0.2295485452 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
13 Hb_000258_330 0.2320162613 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_007831_020 0.233189627 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001059_170 0.233797659 - - hexose transporter 1 [Hevea brasiliensis]
16 Hb_006570_070 0.2378777397 - - cyclophilin [Hevea brasiliensis]
17 Hb_001080_280 0.2380911774 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
18 Hb_001504_140 0.2406963078 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
19 Hb_000243_080 0.2430781063 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
20 Hb_003849_100 0.2431553072 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]

Gene co-expression network

sample Hb_002843_080 Hb_002843_080 Hb_000539_030 Hb_000539_030 Hb_002843_080--Hb_000539_030 Hb_006538_140 Hb_006538_140 Hb_002843_080--Hb_006538_140 Hb_002260_030 Hb_002260_030 Hb_002843_080--Hb_002260_030 Hb_024154_020 Hb_024154_020 Hb_002843_080--Hb_024154_020 Hb_000914_170 Hb_000914_170 Hb_002843_080--Hb_000914_170 Hb_000260_210 Hb_000260_210 Hb_002843_080--Hb_000260_210 Hb_001587_070 Hb_001587_070 Hb_000539_030--Hb_001587_070 Hb_162275_030 Hb_162275_030 Hb_000539_030--Hb_162275_030 Hb_012423_050 Hb_012423_050 Hb_000539_030--Hb_012423_050 Hb_001006_180 Hb_001006_180 Hb_000539_030--Hb_001006_180 Hb_004738_010 Hb_004738_010 Hb_000539_030--Hb_004738_010 Hb_000907_090 Hb_000907_090 Hb_000539_030--Hb_000907_090 Hb_011457_090 Hb_011457_090 Hb_006538_140--Hb_011457_090 Hb_183961_010 Hb_183961_010 Hb_006538_140--Hb_183961_010 Hb_027751_060 Hb_027751_060 Hb_006538_140--Hb_027751_060 Hb_000322_140 Hb_000322_140 Hb_006538_140--Hb_000322_140 Hb_000705_290 Hb_000705_290 Hb_006538_140--Hb_000705_290 Hb_006538_140--Hb_000260_210 Hb_001357_120 Hb_001357_120 Hb_002260_030--Hb_001357_120 Hb_002774_050 Hb_002774_050 Hb_002260_030--Hb_002774_050 Hb_002260_030--Hb_000914_170 Hb_008948_100 Hb_008948_100 Hb_002260_030--Hb_008948_100 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_002260_030--Hb_000705_290 Hb_000752_070 Hb_000752_070 Hb_024154_020--Hb_000752_070 Hb_001712_040 Hb_001712_040 Hb_024154_020--Hb_001712_040 Hb_144484_010 Hb_144484_010 Hb_024154_020--Hb_144484_010 Hb_000922_120 Hb_000922_120 Hb_024154_020--Hb_000922_120 Hb_001504_140 Hb_001504_140 Hb_024154_020--Hb_001504_140 Hb_000243_080 Hb_000243_080 Hb_000914_170--Hb_000243_080 Hb_000272_140 Hb_000272_140 Hb_000914_170--Hb_000272_140 Hb_000027_150 Hb_000027_150 Hb_000914_170--Hb_000027_150 Hb_003687_150 Hb_003687_150 Hb_000914_170--Hb_003687_150 Hb_000046_100 Hb_000046_100 Hb_000914_170--Hb_000046_100 Hb_000300_220 Hb_000300_220 Hb_000260_210--Hb_000300_220 Hb_006472_050 Hb_006472_050 Hb_000260_210--Hb_006472_050 Hb_000260_210--Hb_011457_090 Hb_000329_180 Hb_000329_180 Hb_000260_210--Hb_000329_180 Hb_011377_050 Hb_011377_050 Hb_000260_210--Hb_011377_050 Hb_002182_030 Hb_002182_030 Hb_000260_210--Hb_002182_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.0635 23.4809 28.0744 214.081 11.3569 54.7225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
408.009 76.9813 370.229 29.0674 119.029

CAGE analysis