Hb_000032_050

Information

Type -
Description -
Location Contig32: 46152-46574
Sequence    

Annotation

kegg
ID rcu:RCOM_1691130
description hypothetical protein
nr
ID XP_002509931.1
description hypothetical protein RCOM_1691130 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCP7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000032_050 0.0 - - hypothetical protein RCOM_1691130 [Ricinus communis]
2 Hb_001922_180 0.2272704016 - - hevamine-A precursor, putative [Ricinus communis]
3 Hb_000445_170 0.2292124994 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
4 Hb_113739_010 0.2319632833 - - hypothetical protein JCGZ_06379 [Jatropha curcas]
5 Hb_000109_230 0.2357694645 - - conserved hypothetical protein [Ricinus communis]
6 Hb_033354_020 0.241460145 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_001828_100 0.2446579987 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
8 Hb_000137_070 0.2633606658 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
9 Hb_002732_030 0.2642956265 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
10 Hb_002572_030 0.266330091 - - PREDICTED: diacylglycerol kinase theta [Jatropha curcas]
11 Hb_001998_170 0.2670187661 - - BnaC07g08230D [Brassica napus]
12 Hb_000895_080 0.2687119221 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1-like [Jatropha curcas]
13 Hb_000566_020 0.2713607653 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
14 Hb_033870_010 0.275275622 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
15 Hb_002228_100 0.2761036116 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_001153_150 0.281381934 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
17 Hb_000138_170 0.2815020127 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
18 Hb_033594_070 0.2821105078 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
19 Hb_001205_160 0.282775082 - - hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
20 Hb_000826_090 0.2832460819 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]

Gene co-expression network

sample Hb_000032_050 Hb_000032_050 Hb_001922_180 Hb_001922_180 Hb_000032_050--Hb_001922_180 Hb_000445_170 Hb_000445_170 Hb_000032_050--Hb_000445_170 Hb_113739_010 Hb_113739_010 Hb_000032_050--Hb_113739_010 Hb_000109_230 Hb_000109_230 Hb_000032_050--Hb_000109_230 Hb_033354_020 Hb_033354_020 Hb_000032_050--Hb_033354_020 Hb_001828_100 Hb_001828_100 Hb_000032_050--Hb_001828_100 Hb_033376_010 Hb_033376_010 Hb_001922_180--Hb_033376_010 Hb_001205_160 Hb_001205_160 Hb_001922_180--Hb_001205_160 Hb_000975_180 Hb_000975_180 Hb_001922_180--Hb_000975_180 Hb_000130_100 Hb_000130_100 Hb_001922_180--Hb_000130_100 Hb_003502_100 Hb_003502_100 Hb_001922_180--Hb_003502_100 Hb_000069_740 Hb_000069_740 Hb_000445_170--Hb_000069_740 Hb_002228_100 Hb_002228_100 Hb_000445_170--Hb_002228_100 Hb_000137_070 Hb_000137_070 Hb_000445_170--Hb_000137_070 Hb_000733_080 Hb_000733_080 Hb_000445_170--Hb_000733_080 Hb_006452_110 Hb_006452_110 Hb_000445_170--Hb_006452_110 Hb_012340_050 Hb_012340_050 Hb_000445_170--Hb_012340_050 Hb_113739_010--Hb_000137_070 Hb_182516_010 Hb_182516_010 Hb_113739_010--Hb_182516_010 Hb_000390_200 Hb_000390_200 Hb_113739_010--Hb_000390_200 Hb_068804_150 Hb_068804_150 Hb_113739_010--Hb_068804_150 Hb_000139_330 Hb_000139_330 Hb_113739_010--Hb_000139_330 Hb_002603_130 Hb_002603_130 Hb_113739_010--Hb_002603_130 Hb_001597_050 Hb_001597_050 Hb_000109_230--Hb_001597_050 Hb_007210_020 Hb_007210_020 Hb_000109_230--Hb_007210_020 Hb_000157_050 Hb_000157_050 Hb_000109_230--Hb_000157_050 Hb_000109_230--Hb_001828_100 Hb_178968_040 Hb_178968_040 Hb_000109_230--Hb_178968_040 Hb_001377_280 Hb_001377_280 Hb_033354_020--Hb_001377_280 Hb_000217_020 Hb_000217_020 Hb_033354_020--Hb_000217_020 Hb_111985_110 Hb_111985_110 Hb_033354_020--Hb_111985_110 Hb_003589_080 Hb_003589_080 Hb_033354_020--Hb_003589_080 Hb_001314_030 Hb_001314_030 Hb_033354_020--Hb_001314_030 Hb_000362_180 Hb_000362_180 Hb_033354_020--Hb_000362_180 Hb_118228_010 Hb_118228_010 Hb_001828_100--Hb_118228_010 Hb_000261_170 Hb_000261_170 Hb_001828_100--Hb_000261_170 Hb_004158_100 Hb_004158_100 Hb_001828_100--Hb_004158_100 Hb_128473_010 Hb_128473_010 Hb_001828_100--Hb_128473_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.74713 0.400706 3.01043 22.5368 1.47813 1.26847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5287 5.49566 1.37575 0.478307 2.52161

CAGE analysis