Hb_002228_100

Information

Type -
Description -
Location Contig2228: 85107-91467
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17460g
description POPTRDRAFT_414694; hypothetical protein
nr
ID AGL44401.1
description calcineurin-like phosphoesterase [Manihot esculenta]
swissprot
ID Q6TPH1
description Purple acid phosphatase 23 OS=Arabidopsis thaliana GN=PAP23 PE=1 SV=2
trembl
ID V9NC54
description Purple acid phosphatase OS=Manihot esculenta GN=PAP23 PE=2 SV=1
Gene Ontology
ID GO:0003993
description purple acid phosphatase 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23071: 85237-91516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002228_100 0.0 - - calcineurin-like phosphoesterase [Manihot esculenta]
2 Hb_000445_170 0.1780217997 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
3 Hb_000137_070 0.1903161592 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
4 Hb_000243_040 0.1980828538 - - -
5 Hb_013492_010 0.2081354702 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
6 Hb_010068_100 0.2136821461 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
7 Hb_005271_020 0.216205901 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
8 Hb_000253_030 0.2198177117 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
9 Hb_003551_010 0.2392928189 - - hypothetical protein CISIN_1g030786mg [Citrus sinensis]
10 Hb_113739_010 0.2396425123 - - hypothetical protein JCGZ_06379 [Jatropha curcas]
11 Hb_001357_100 0.2406559675 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
12 Hb_066913_010 0.2412850569 - - hypothetical protein POPTR_0006s03150g [Populus trichocarpa]
13 Hb_082407_010 0.2415229623 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
14 Hb_000994_110 0.2434310123 - - conserved hypothetical protein [Ricinus communis]
15 Hb_068922_010 0.2434644522 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
16 Hb_009051_020 0.2461441008 - - Thioredoxin O1 [Morus notabilis]
17 Hb_004374_180 0.2475337614 - - GMP synthase, putative [Ricinus communis]
18 Hb_000010_210 0.2519205078 - - PREDICTED: centromere protein X [Jatropha curcas]
19 Hb_002027_020 0.2527376878 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
20 Hb_155541_010 0.254488404 - - -

Gene co-expression network

sample Hb_002228_100 Hb_002228_100 Hb_000445_170 Hb_000445_170 Hb_002228_100--Hb_000445_170 Hb_000137_070 Hb_000137_070 Hb_002228_100--Hb_000137_070 Hb_000243_040 Hb_000243_040 Hb_002228_100--Hb_000243_040 Hb_013492_010 Hb_013492_010 Hb_002228_100--Hb_013492_010 Hb_010068_100 Hb_010068_100 Hb_002228_100--Hb_010068_100 Hb_005271_020 Hb_005271_020 Hb_002228_100--Hb_005271_020 Hb_000069_740 Hb_000069_740 Hb_000445_170--Hb_000069_740 Hb_000445_170--Hb_000137_070 Hb_000733_080 Hb_000733_080 Hb_000445_170--Hb_000733_080 Hb_006452_110 Hb_006452_110 Hb_000445_170--Hb_006452_110 Hb_012340_050 Hb_012340_050 Hb_000445_170--Hb_012340_050 Hb_113739_010 Hb_113739_010 Hb_000137_070--Hb_113739_010 Hb_182516_010 Hb_182516_010 Hb_000137_070--Hb_182516_010 Hb_150023_010 Hb_150023_010 Hb_000137_070--Hb_150023_010 Hb_007479_050 Hb_007479_050 Hb_000137_070--Hb_007479_050 Hb_003669_010 Hb_003669_010 Hb_000137_070--Hb_003669_010 Hb_000994_110 Hb_000994_110 Hb_000243_040--Hb_000994_110 Hb_078185_010 Hb_078185_010 Hb_000243_040--Hb_078185_010 Hb_000584_020 Hb_000584_020 Hb_000243_040--Hb_000584_020 Hb_000352_290 Hb_000352_290 Hb_000243_040--Hb_000352_290 Hb_182964_010 Hb_182964_010 Hb_000243_040--Hb_182964_010 Hb_000010_210 Hb_000010_210 Hb_000243_040--Hb_000010_210 Hb_082407_010 Hb_082407_010 Hb_013492_010--Hb_082407_010 Hb_163599_010 Hb_163599_010 Hb_013492_010--Hb_163599_010 Hb_003405_060 Hb_003405_060 Hb_013492_010--Hb_003405_060 Hb_001405_130 Hb_001405_130 Hb_013492_010--Hb_001405_130 Hb_008442_010 Hb_008442_010 Hb_013492_010--Hb_008442_010 Hb_014834_140 Hb_014834_140 Hb_013492_010--Hb_014834_140 Hb_000253_030 Hb_000253_030 Hb_010068_100--Hb_000253_030 Hb_136765_010 Hb_136765_010 Hb_010068_100--Hb_136765_010 Hb_068922_010 Hb_068922_010 Hb_010068_100--Hb_068922_010 Hb_006541_090 Hb_006541_090 Hb_010068_100--Hb_006541_090 Hb_010068_100--Hb_082407_010 Hb_008667_040 Hb_008667_040 Hb_010068_100--Hb_008667_040 Hb_002582_070 Hb_002582_070 Hb_005271_020--Hb_002582_070 Hb_051017_010 Hb_051017_010 Hb_005271_020--Hb_051017_010 Hb_002027_020 Hb_002027_020 Hb_005271_020--Hb_002027_020 Hb_005271_020--Hb_068922_010 Hb_024505_020 Hb_024505_020 Hb_005271_020--Hb_024505_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.43452 0.70282 4.16772 20.6598 6.01663 9.7201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3285 9.73352 0.882921 0.0890595 0.157419

CAGE analysis