Hb_051017_010

Information

Type -
Description -
Location Contig51017: 592-1873
Sequence    

Annotation

kegg
ID tcc:TCM_031047
description hypothetical protein
nr
ID XP_007021006.1
description Uncharacterized protein TCM_031047 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061F660
description Uncharacterized protein OS=Theobroma cacao GN=TCM_031047 PE=4 SV=1
Gene Ontology
ID GO:0016787
description leucine-rich repeat containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46327: 1070-1751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051017_010 0.0 - - Uncharacterized protein TCM_031047 [Theobroma cacao]
2 Hb_005928_080 0.1677834881 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
3 Hb_002582_070 0.185575603 - - -
4 Hb_001247_170 0.21299448 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
5 Hb_184134_010 0.2156231322 - - PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
6 Hb_005271_020 0.2160102199 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
7 Hb_003580_030 0.2172460629 - - fimbrin, putative [Ricinus communis]
8 Hb_010068_060 0.225483782 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
9 Hb_005271_080 0.2255577313 - - receptor kinase, putative [Ricinus communis]
10 Hb_095831_010 0.2264163617 - - PREDICTED: uncharacterized protein LOC104884649 [Beta vulgaris subsp. vulgaris]
11 Hb_002687_040 0.2319250656 - - PREDICTED: alpha-galactosidase 1-like [Jatropha curcas]
12 Hb_002508_010 0.2324352896 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
13 Hb_000566_080 0.236943304 - - -
14 Hb_006269_020 0.2432855434 - - autophagy protein, putative [Ricinus communis]
15 Hb_000025_050 0.2542454907 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
16 Hb_005511_060 0.2543236304 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001310_110 0.2553711321 - - unnamed protein product [Coffea canephora]
18 Hb_003683_180 0.2580726697 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000261_520 0.2626224096 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
20 Hb_000755_080 0.2628642999 - - hypothetical protein RCOM_1016710 [Ricinus communis]

Gene co-expression network

sample Hb_051017_010 Hb_051017_010 Hb_005928_080 Hb_005928_080 Hb_051017_010--Hb_005928_080 Hb_002582_070 Hb_002582_070 Hb_051017_010--Hb_002582_070 Hb_001247_170 Hb_001247_170 Hb_051017_010--Hb_001247_170 Hb_184134_010 Hb_184134_010 Hb_051017_010--Hb_184134_010 Hb_005271_020 Hb_005271_020 Hb_051017_010--Hb_005271_020 Hb_003580_030 Hb_003580_030 Hb_051017_010--Hb_003580_030 Hb_005271_080 Hb_005271_080 Hb_005928_080--Hb_005271_080 Hb_005928_080--Hb_001247_170 Hb_001279_330 Hb_001279_330 Hb_005928_080--Hb_001279_330 Hb_000261_520 Hb_000261_520 Hb_005928_080--Hb_000261_520 Hb_000175_490 Hb_000175_490 Hb_005928_080--Hb_000175_490 Hb_002582_070--Hb_005271_020 Hb_001999_150 Hb_001999_150 Hb_002582_070--Hb_001999_150 Hb_001421_020 Hb_001421_020 Hb_002582_070--Hb_001421_020 Hb_000465_040 Hb_000465_040 Hb_002582_070--Hb_000465_040 Hb_000424_250 Hb_000424_250 Hb_002582_070--Hb_000424_250 Hb_002687_040 Hb_002687_040 Hb_001247_170--Hb_002687_040 Hb_001584_370 Hb_001584_370 Hb_001247_170--Hb_001584_370 Hb_014361_100 Hb_014361_100 Hb_001247_170--Hb_014361_100 Hb_001247_170--Hb_005271_080 Hb_000042_270 Hb_000042_270 Hb_001247_170--Hb_000042_270 Hb_000497_230 Hb_000497_230 Hb_001247_170--Hb_000497_230 Hb_004668_110 Hb_004668_110 Hb_184134_010--Hb_004668_110 Hb_184134_010--Hb_003580_030 Hb_044662_060 Hb_044662_060 Hb_184134_010--Hb_044662_060 Hb_000556_150 Hb_000556_150 Hb_184134_010--Hb_000556_150 Hb_006269_020 Hb_006269_020 Hb_184134_010--Hb_006269_020 Hb_098315_070 Hb_098315_070 Hb_184134_010--Hb_098315_070 Hb_002228_100 Hb_002228_100 Hb_005271_020--Hb_002228_100 Hb_002027_020 Hb_002027_020 Hb_005271_020--Hb_002027_020 Hb_068922_010 Hb_068922_010 Hb_005271_020--Hb_068922_010 Hb_024505_020 Hb_024505_020 Hb_005271_020--Hb_024505_020 Hb_000735_180 Hb_000735_180 Hb_003580_030--Hb_000735_180 Hb_003580_030--Hb_006269_020 Hb_003580_030--Hb_004668_110 Hb_007763_040 Hb_007763_040 Hb_003580_030--Hb_007763_040 Hb_006694_020 Hb_006694_020 Hb_003580_030--Hb_006694_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.913484 0.247457 2.24337 4.80434 8.86223 4.85409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39836 2.13505 2.07854 0.158407 0.457831

CAGE analysis