Hb_002027_020

Information

Type -
Description -
Location Contig2027: 8523-9194
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29430g
description POPTRDRAFT_753115; hypothetical protein
nr
ID XP_012092301.1
description PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_020 0.0 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
2 Hb_000589_150 0.1661545461 - - PREDICTED: factor of DNA methylation 1-like isoform X1 [Beta vulgaris subsp. vulgaris]
3 Hb_000679_300 0.1681065468 - - PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
4 Hb_000465_040 0.1714143425 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
5 Hb_000457_110 0.1766516185 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
6 Hb_000621_060 0.1766563439 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
7 Hb_001817_090 0.1782698132 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
8 Hb_001416_010 0.1790156965 - - Thioredoxin H-type, putative [Ricinus communis]
9 Hb_001454_400 0.1803708195 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
10 Hb_078185_010 0.180723661 - - -
11 Hb_005288_190 0.1820091535 - - PREDICTED: exportin-4 [Jatropha curcas]
12 Hb_002151_090 0.1827942169 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
13 Hb_028390_010 0.1833802664 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
14 Hb_014783_010 0.1836766756 - - cold-inducible RNA binding protein, putative [Ricinus communis]
15 Hb_003688_130 0.1839126548 - - phosphoserine phosphatase, putative [Ricinus communis]
16 Hb_011970_030 0.1846501072 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
17 Hb_000723_090 0.1846726581 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003746_040 0.1853125398 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
19 Hb_000670_050 0.1856935339 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
20 Hb_001689_020 0.1857353418 - - hypothetical protein JCGZ_10660 [Jatropha curcas]

Gene co-expression network

sample Hb_002027_020 Hb_002027_020 Hb_000589_150 Hb_000589_150 Hb_002027_020--Hb_000589_150 Hb_000679_300 Hb_000679_300 Hb_002027_020--Hb_000679_300 Hb_000465_040 Hb_000465_040 Hb_002027_020--Hb_000465_040 Hb_000457_110 Hb_000457_110 Hb_002027_020--Hb_000457_110 Hb_000621_060 Hb_000621_060 Hb_002027_020--Hb_000621_060 Hb_001817_090 Hb_001817_090 Hb_002027_020--Hb_001817_090 Hb_001350_010 Hb_001350_010 Hb_000589_150--Hb_001350_010 Hb_000103_080 Hb_000103_080 Hb_000589_150--Hb_000103_080 Hb_003405_050 Hb_003405_050 Hb_000589_150--Hb_003405_050 Hb_028390_010 Hb_028390_010 Hb_000589_150--Hb_028390_010 Hb_000714_030 Hb_000714_030 Hb_000589_150--Hb_000714_030 Hb_114343_010 Hb_114343_010 Hb_000589_150--Hb_114343_010 Hb_000679_300--Hb_001817_090 Hb_078185_010 Hb_078185_010 Hb_000679_300--Hb_078185_010 Hb_005278_020 Hb_005278_020 Hb_000679_300--Hb_005278_020 Hb_005045_060 Hb_005045_060 Hb_000679_300--Hb_005045_060 Hb_000630_060 Hb_000630_060 Hb_000679_300--Hb_000630_060 Hb_005667_040 Hb_005667_040 Hb_000679_300--Hb_005667_040 Hb_000465_040--Hb_000457_110 Hb_000723_090 Hb_000723_090 Hb_000465_040--Hb_000723_090 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_002105_090 Hb_002105_090 Hb_000465_040--Hb_002105_090 Hb_000465_040--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000465_040--Hb_000084_290 Hb_004944_010 Hb_004944_010 Hb_000457_110--Hb_004944_010 Hb_000465_430 Hb_000465_430 Hb_000457_110--Hb_000465_430 Hb_001936_080 Hb_001936_080 Hb_000457_110--Hb_001936_080 Hb_000349_060 Hb_000349_060 Hb_000457_110--Hb_000349_060 Hb_012092_010 Hb_012092_010 Hb_000457_110--Hb_012092_010 Hb_025236_040 Hb_025236_040 Hb_000621_060--Hb_025236_040 Hb_008406_160 Hb_008406_160 Hb_000621_060--Hb_008406_160 Hb_001009_040 Hb_001009_040 Hb_000621_060--Hb_001009_040 Hb_000065_080 Hb_000065_080 Hb_000621_060--Hb_000065_080 Hb_000258_410 Hb_000258_410 Hb_000621_060--Hb_000258_410 Hb_007632_090 Hb_007632_090 Hb_000621_060--Hb_007632_090 Hb_001817_090--Hb_005045_060 Hb_033594_110 Hb_033594_110 Hb_001817_090--Hb_033594_110 Hb_001817_090--Hb_000457_110 Hb_165132_010 Hb_165132_010 Hb_001817_090--Hb_165132_010 Hb_145880_030 Hb_145880_030 Hb_001817_090--Hb_145880_030 Hb_002811_260 Hb_002811_260 Hb_001817_090--Hb_002811_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55226 0.319887 0.434882 1.65917 1.7288 0.908006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37079 1.48164 0.239189 0.19217 0.397512

CAGE analysis