Hb_003405_050

Information

Type -
Description -
Location Contig3405: 77301-78907
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35617: 77860-78161 , PASA_asmbl_35618: 78227-78683 , PASA_asmbl_35619: 79081-79743
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003405_050 0.0 - - -
2 Hb_002067_020 0.1204124098 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001350_010 0.1254026892 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
4 Hb_000589_150 0.1293906082 - - PREDICTED: factor of DNA methylation 1-like isoform X1 [Beta vulgaris subsp. vulgaris]
5 Hb_007380_090 0.131914735 - - -
6 Hb_114343_010 0.1360840359 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
7 Hb_003363_010 0.1375398692 - - conserved hypothetical protein [Ricinus communis]
8 Hb_144598_030 0.1386096681 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
9 Hb_028390_010 0.1407908922 - - PREDICTED: filament-like plant protein 3 [Populus euphratica]
10 Hb_000077_090 0.1410592046 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000915_110 0.1417675786 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
12 Hb_000364_060 0.1419002597 - - JHL03K20.4 [Jatropha curcas]
13 Hb_000523_090 0.1428723448 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
14 Hb_000982_160 0.1434883088 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
15 Hb_002374_020 0.1443289787 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
16 Hb_002174_060 0.1450371063 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
17 Hb_001863_110 0.1462137314 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_031862_180 0.1469166424 - - PREDICTED: uncharacterized protein LOC105644669 [Jatropha curcas]
19 Hb_000014_150 0.1471634397 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_000384_090 0.1474082385 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]

Gene co-expression network

sample Hb_003405_050 Hb_003405_050 Hb_002067_020 Hb_002067_020 Hb_003405_050--Hb_002067_020 Hb_001350_010 Hb_001350_010 Hb_003405_050--Hb_001350_010 Hb_000589_150 Hb_000589_150 Hb_003405_050--Hb_000589_150 Hb_007380_090 Hb_007380_090 Hb_003405_050--Hb_007380_090 Hb_114343_010 Hb_114343_010 Hb_003405_050--Hb_114343_010 Hb_003363_010 Hb_003363_010 Hb_003405_050--Hb_003363_010 Hb_000523_090 Hb_000523_090 Hb_002067_020--Hb_000523_090 Hb_000364_080 Hb_000364_080 Hb_002067_020--Hb_000364_080 Hb_031862_180 Hb_031862_180 Hb_002067_020--Hb_031862_180 Hb_002067_020--Hb_003363_010 Hb_000364_060 Hb_000364_060 Hb_002067_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_002067_020--Hb_134364_010 Hb_004182_040 Hb_004182_040 Hb_001350_010--Hb_004182_040 Hb_003125_160 Hb_003125_160 Hb_001350_010--Hb_003125_160 Hb_000627_030 Hb_000627_030 Hb_001350_010--Hb_000627_030 Hb_000486_010 Hb_000486_010 Hb_001350_010--Hb_000486_010 Hb_000345_170 Hb_000345_170 Hb_001350_010--Hb_000345_170 Hb_007044_080 Hb_007044_080 Hb_001350_010--Hb_007044_080 Hb_000589_150--Hb_001350_010 Hb_000103_080 Hb_000103_080 Hb_000589_150--Hb_000103_080 Hb_028390_010 Hb_028390_010 Hb_000589_150--Hb_028390_010 Hb_000714_030 Hb_000714_030 Hb_000589_150--Hb_000714_030 Hb_000589_150--Hb_114343_010 Hb_000679_150 Hb_000679_150 Hb_007380_090--Hb_000679_150 Hb_000436_040 Hb_000436_040 Hb_007380_090--Hb_000436_040 Hb_002600_140 Hb_002600_140 Hb_007380_090--Hb_002600_140 Hb_007380_090--Hb_000364_060 Hb_007380_090--Hb_003363_010 Hb_001102_150 Hb_001102_150 Hb_007380_090--Hb_001102_150 Hb_012008_020 Hb_012008_020 Hb_114343_010--Hb_012008_020 Hb_144598_030 Hb_144598_030 Hb_114343_010--Hb_144598_030 Hb_000373_240 Hb_000373_240 Hb_114343_010--Hb_000373_240 Hb_029921_040 Hb_029921_040 Hb_114343_010--Hb_029921_040 Hb_010691_060 Hb_010691_060 Hb_114343_010--Hb_010691_060 Hb_002391_300 Hb_002391_300 Hb_114343_010--Hb_002391_300 Hb_001863_110 Hb_001863_110 Hb_003363_010--Hb_001863_110 Hb_003363_010--Hb_000679_150 Hb_003434_060 Hb_003434_060 Hb_003363_010--Hb_003434_060 Hb_001609_010 Hb_001609_010 Hb_003363_010--Hb_001609_010 Hb_000316_030 Hb_000316_030 Hb_003363_010--Hb_000316_030 Hb_002174_060 Hb_002174_060 Hb_003363_010--Hb_002174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22687 0.232529 0.217972 0.966482 1.57769 2.37706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0267 1.02707 0.387846 0.419927 1.002

CAGE analysis