Hb_000679_300

Information

Type -
Description -
Location Contig679: 205360-208352
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01810g
description POPTRDRAFT_825742; hypothetical protein
nr
ID XP_012076546.1
description PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07155 PE=4 SV=1
Gene Ontology
ID GO:0017176
description phosphatidylinositolglycan-related family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53714: 205268-208108 , PASA_asmbl_53715: 207417-207603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_300 0.0 - - PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
2 Hb_001817_090 0.0951125132 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
3 Hb_078185_010 0.0992136409 - - -
4 Hb_005278_020 0.102911505 - - PREDICTED: sorcin-like [Jatropha curcas]
5 Hb_005045_060 0.1079072729 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
6 Hb_000630_060 0.1116113962 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
7 Hb_005667_040 0.1124389108 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
8 Hb_005731_050 0.1138477932 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
9 Hb_001341_090 0.1138623358 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
10 Hb_001234_080 0.114259052 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
11 Hb_003894_070 0.1144816722 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
12 Hb_000960_060 0.1180324667 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
13 Hb_002900_160 0.118458068 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
14 Hb_000465_040 0.1196201829 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
15 Hb_012022_120 0.1214487326 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
16 Hb_022318_010 0.1251105191 - - conserved hypothetical protein [Ricinus communis]
17 Hb_019249_010 0.1265391793 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
18 Hb_000505_140 0.126684009 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
19 Hb_000457_110 0.1276259378 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
20 Hb_014720_040 0.1279655944 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000679_300 Hb_000679_300 Hb_001817_090 Hb_001817_090 Hb_000679_300--Hb_001817_090 Hb_078185_010 Hb_078185_010 Hb_000679_300--Hb_078185_010 Hb_005278_020 Hb_005278_020 Hb_000679_300--Hb_005278_020 Hb_005045_060 Hb_005045_060 Hb_000679_300--Hb_005045_060 Hb_000630_060 Hb_000630_060 Hb_000679_300--Hb_000630_060 Hb_005667_040 Hb_005667_040 Hb_000679_300--Hb_005667_040 Hb_001817_090--Hb_005045_060 Hb_033594_110 Hb_033594_110 Hb_001817_090--Hb_033594_110 Hb_000457_110 Hb_000457_110 Hb_001817_090--Hb_000457_110 Hb_165132_010 Hb_165132_010 Hb_001817_090--Hb_165132_010 Hb_145880_030 Hb_145880_030 Hb_001817_090--Hb_145880_030 Hb_002811_260 Hb_002811_260 Hb_001817_090--Hb_002811_260 Hb_004784_020 Hb_004784_020 Hb_078185_010--Hb_004784_020 Hb_078185_010--Hb_001817_090 Hb_002289_120 Hb_002289_120 Hb_078185_010--Hb_002289_120 Hb_031089_040 Hb_031089_040 Hb_078185_010--Hb_031089_040 Hb_004306_020 Hb_004306_020 Hb_078185_010--Hb_004306_020 Hb_078185_010--Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005278_020--Hb_026314_020 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_005278_020--Hb_004784_020 Hb_001341_090 Hb_001341_090 Hb_005045_060--Hb_001341_090 Hb_004032_010 Hb_004032_010 Hb_005045_060--Hb_004032_010 Hb_000815_320 Hb_000815_320 Hb_005045_060--Hb_000815_320 Hb_024071_020 Hb_024071_020 Hb_005045_060--Hb_024071_020 Hb_001489_060 Hb_001489_060 Hb_005045_060--Hb_001489_060 Hb_005045_060--Hb_002811_260 Hb_000630_060--Hb_033594_110 Hb_003927_140 Hb_003927_140 Hb_000630_060--Hb_003927_140 Hb_007317_150 Hb_007317_150 Hb_000630_060--Hb_007317_150 Hb_000926_300 Hb_000926_300 Hb_000630_060--Hb_000926_300 Hb_002518_050 Hb_002518_050 Hb_000630_060--Hb_002518_050 Hb_002110_120 Hb_002110_120 Hb_000630_060--Hb_002110_120 Hb_002686_110 Hb_002686_110 Hb_005667_040--Hb_002686_110 Hb_004709_010 Hb_004709_010 Hb_005667_040--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_005667_040--Hb_014720_040 Hb_005667_040--Hb_005278_020 Hb_005667_040--Hb_026314_020 Hb_006573_020 Hb_006573_020 Hb_005667_040--Hb_006573_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72863 3.25967 5.50342 12.3555 13.2812 9.91449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8823 23.7166 6.12556 2.86604 4.79027

CAGE analysis