Hb_005271_020

Information

Type -
Description -
Location Contig5271: 19716-23162
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09230g
description POPTRDRAFT_180407; glutathione S-transferase family protein
nr
ID XP_012074144.1
description PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
swissprot
ID Q9ZRT5
description Glutathione S-transferase T1 OS=Arabidopsis thaliana GN=GSTT1 PE=2 SV=1
trembl
ID A0A067KVM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09530 PE=4 SV=1
Gene Ontology
ID GO:0004364
description glutathione s-transferase t1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47044: 20559-21450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005271_020 0.0 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
2 Hb_002582_070 0.1977012851 - - -
3 Hb_051017_010 0.2160102199 - - Uncharacterized protein TCM_031047 [Theobroma cacao]
4 Hb_002228_100 0.216205901 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_002027_020 0.2248644382 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
6 Hb_068922_010 0.2300682178 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
7 Hb_024505_020 0.2419459572 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
8 Hb_000445_170 0.2467986109 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
9 Hb_005928_080 0.2474432459 - - PREDICTED: probable galacturonosyltransferase 6 isoform X1 [Jatropha curcas]
10 Hb_000253_030 0.250177002 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
11 Hb_010068_100 0.2506098867 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
12 Hb_136765_010 0.252816186 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
13 Hb_001276_020 0.257894286 - - hypothetical protein VITISV_003263 [Vitis vinifera]
14 Hb_001195_580 0.2605468851 - - hypothetical protein POPTR_0014s04130g [Populus trichocarpa]
15 Hb_012867_010 0.2610273914 - - Vacuolar protein sorting 45 [Theobroma cacao]
16 Hb_000661_160 0.2612662556 - - hexokinase [Manihot esculenta]
17 Hb_011257_010 0.2613394605 - - -
18 Hb_000243_040 0.2617556801 - - -
19 Hb_000465_040 0.2620520772 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
20 Hb_005271_080 0.2624814777 - - receptor kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005271_020 Hb_005271_020 Hb_002582_070 Hb_002582_070 Hb_005271_020--Hb_002582_070 Hb_051017_010 Hb_051017_010 Hb_005271_020--Hb_051017_010 Hb_002228_100 Hb_002228_100 Hb_005271_020--Hb_002228_100 Hb_002027_020 Hb_002027_020 Hb_005271_020--Hb_002027_020 Hb_068922_010 Hb_068922_010 Hb_005271_020--Hb_068922_010 Hb_024505_020 Hb_024505_020 Hb_005271_020--Hb_024505_020 Hb_002582_070--Hb_051017_010 Hb_001999_150 Hb_001999_150 Hb_002582_070--Hb_001999_150 Hb_001421_020 Hb_001421_020 Hb_002582_070--Hb_001421_020 Hb_000465_040 Hb_000465_040 Hb_002582_070--Hb_000465_040 Hb_000424_250 Hb_000424_250 Hb_002582_070--Hb_000424_250 Hb_005928_080 Hb_005928_080 Hb_051017_010--Hb_005928_080 Hb_001247_170 Hb_001247_170 Hb_051017_010--Hb_001247_170 Hb_184134_010 Hb_184134_010 Hb_051017_010--Hb_184134_010 Hb_003580_030 Hb_003580_030 Hb_051017_010--Hb_003580_030 Hb_000445_170 Hb_000445_170 Hb_002228_100--Hb_000445_170 Hb_000137_070 Hb_000137_070 Hb_002228_100--Hb_000137_070 Hb_000243_040 Hb_000243_040 Hb_002228_100--Hb_000243_040 Hb_013492_010 Hb_013492_010 Hb_002228_100--Hb_013492_010 Hb_010068_100 Hb_010068_100 Hb_002228_100--Hb_010068_100 Hb_000589_150 Hb_000589_150 Hb_002027_020--Hb_000589_150 Hb_000679_300 Hb_000679_300 Hb_002027_020--Hb_000679_300 Hb_002027_020--Hb_000465_040 Hb_000457_110 Hb_000457_110 Hb_002027_020--Hb_000457_110 Hb_000621_060 Hb_000621_060 Hb_002027_020--Hb_000621_060 Hb_001817_090 Hb_001817_090 Hb_002027_020--Hb_001817_090 Hb_136765_010 Hb_136765_010 Hb_068922_010--Hb_136765_010 Hb_012867_010 Hb_012867_010 Hb_068922_010--Hb_012867_010 Hb_068922_010--Hb_010068_100 Hb_012120_030 Hb_012120_030 Hb_068922_010--Hb_012120_030 Hb_000253_030 Hb_000253_030 Hb_068922_010--Hb_000253_030 Hb_000789_100 Hb_000789_100 Hb_024505_020--Hb_000789_100 Hb_010968_010 Hb_010968_010 Hb_024505_020--Hb_010968_010 Hb_000670_020 Hb_000670_020 Hb_024505_020--Hb_000670_020 Hb_001951_260 Hb_001951_260 Hb_024505_020--Hb_001951_260 Hb_002450_040 Hb_002450_040 Hb_024505_020--Hb_002450_040 Hb_025236_040 Hb_025236_040 Hb_024505_020--Hb_025236_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28504 0.0500307 0.151136 0.651347 0.788178 0.391244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.498546 0.294027 0.0891165 0 0

CAGE analysis