Hb_003580_030

Information

Type -
Description -
Location Contig3580: 24184-39881
Sequence    

Annotation

kegg
ID rcu:RCOM_0549750
description fimbrin, putative
nr
ID XP_002532285.1
description fimbrin, putative [Ricinus communis]
swissprot
ID Q9FKI0
description Fimbrin-5 OS=Arabidopsis thaliana GN=FIM5 PE=1 SV=1
trembl
ID B9T216
description Fimbrin, putative OS=Ricinus communis GN=RCOM_0549750 PE=4 SV=1
Gene Ontology
ID GO:0003779
description fimbrin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003580_030 0.0 - - fimbrin, putative [Ricinus communis]
2 Hb_184134_010 0.1326002996 - - PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
3 Hb_000735_180 0.1396472267 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
4 Hb_006269_020 0.1457810309 - - autophagy protein, putative [Ricinus communis]
5 Hb_004668_110 0.1612841032 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007763_040 0.1731429971 - - -
7 Hb_006694_020 0.1806475362 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
8 Hb_000883_130 0.1823487581 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
9 Hb_118977_010 0.1907344627 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003363_120 0.1907522873 - - GTP-binding family protein [Populus trichocarpa]
11 Hb_002750_050 0.1924967259 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
12 Hb_002529_060 0.1931545047 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
13 Hb_000915_110 0.1940992735 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
14 Hb_001616_080 0.1948582884 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
15 Hb_000540_150 0.1969002198 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
16 Hb_010381_120 0.19775659 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
17 Hb_006634_040 0.1981322279 - - hypothetical protein VITISV_030841 [Vitis vinifera]
18 Hb_000958_130 0.1986170983 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
19 Hb_000567_360 0.1986512501 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
20 Hb_009111_040 0.1988279405 - - PREDICTED: protein downstream neighbor of Son [Jatropha curcas]

Gene co-expression network

sample Hb_003580_030 Hb_003580_030 Hb_184134_010 Hb_184134_010 Hb_003580_030--Hb_184134_010 Hb_000735_180 Hb_000735_180 Hb_003580_030--Hb_000735_180 Hb_006269_020 Hb_006269_020 Hb_003580_030--Hb_006269_020 Hb_004668_110 Hb_004668_110 Hb_003580_030--Hb_004668_110 Hb_007763_040 Hb_007763_040 Hb_003580_030--Hb_007763_040 Hb_006694_020 Hb_006694_020 Hb_003580_030--Hb_006694_020 Hb_184134_010--Hb_004668_110 Hb_044662_060 Hb_044662_060 Hb_184134_010--Hb_044662_060 Hb_000556_150 Hb_000556_150 Hb_184134_010--Hb_000556_150 Hb_184134_010--Hb_006269_020 Hb_098315_070 Hb_098315_070 Hb_184134_010--Hb_098315_070 Hb_000053_130 Hb_000053_130 Hb_000735_180--Hb_000053_130 Hb_054865_120 Hb_054865_120 Hb_000735_180--Hb_054865_120 Hb_000735_180--Hb_007763_040 Hb_004109_280 Hb_004109_280 Hb_000735_180--Hb_004109_280 Hb_012092_010 Hb_012092_010 Hb_000735_180--Hb_012092_010 Hb_001124_120 Hb_001124_120 Hb_000735_180--Hb_001124_120 Hb_002529_060 Hb_002529_060 Hb_006269_020--Hb_002529_060 Hb_006269_020--Hb_000735_180 Hb_001481_170 Hb_001481_170 Hb_006269_020--Hb_001481_170 Hb_004884_070 Hb_004884_070 Hb_006269_020--Hb_004884_070 Hb_001135_060 Hb_001135_060 Hb_006269_020--Hb_001135_060 Hb_033642_030 Hb_033642_030 Hb_006269_020--Hb_033642_030 Hb_004668_110--Hb_044662_060 Hb_002750_050 Hb_002750_050 Hb_004668_110--Hb_002750_050 Hb_000189_510 Hb_000189_510 Hb_004668_110--Hb_000189_510 Hb_001373_110 Hb_001373_110 Hb_004668_110--Hb_001373_110 Hb_002450_040 Hb_002450_040 Hb_004668_110--Hb_002450_040 Hb_000670_020 Hb_000670_020 Hb_007763_040--Hb_000670_020 Hb_003683_050 Hb_003683_050 Hb_007763_040--Hb_003683_050 Hb_010368_020 Hb_010368_020 Hb_007763_040--Hb_010368_020 Hb_005016_090 Hb_005016_090 Hb_007763_040--Hb_005016_090 Hb_000714_030 Hb_000714_030 Hb_007763_040--Hb_000714_030 Hb_001564_130 Hb_001564_130 Hb_007763_040--Hb_001564_130 Hb_004837_030 Hb_004837_030 Hb_006694_020--Hb_004837_030 Hb_000030_180 Hb_000030_180 Hb_006694_020--Hb_000030_180 Hb_006694_020--Hb_007763_040 Hb_001234_080 Hb_001234_080 Hb_006694_020--Hb_001234_080 Hb_000679_050 Hb_000679_050 Hb_006694_020--Hb_000679_050 Hb_009694_010 Hb_009694_010 Hb_006694_020--Hb_009694_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09154 0.224255 2.31174 1.25097 3.48805 2.67713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31939 1.29342 0.907227 0.0986849 1.04852

CAGE analysis