Hb_000679_050

Information

Type -
Description -
Location Contig679: 53280-55582
Sequence    

Annotation

kegg
ID tcc:TCM_038396
description Alba DNA/RNA-binding protein
nr
ID XP_007013844.1
description Alba DNA/RNA-binding protein [Theobroma cacao]
swissprot
ID O22969
description Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1
trembl
ID A0A061GPW4
description Alba DNA/RNA-binding protein OS=Theobroma cacao GN=TCM_038396 PE=4 SV=1
Gene Ontology
ID GO:0003676
description alba dna rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53671: 49420-52579 , PASA_asmbl_53672: 53301-55557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_050 0.0 - - Alba DNA/RNA-binding protein [Theobroma cacao]
2 Hb_000030_180 0.1220950085 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
3 Hb_006694_020 0.1253042054 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
4 Hb_001329_290 0.13234089 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
5 Hb_000265_240 0.1324406254 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
6 Hb_001234_080 0.133636578 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
7 Hb_004449_170 0.1367083271 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
8 Hb_007163_070 0.1397855821 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
9 Hb_003942_020 0.1412736165 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_004837_030 0.142062546 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
11 Hb_004709_010 0.1424885268 - - hypothetical protein B456_007G097300 [Gossypium raimondii]
12 Hb_002477_300 0.1432214063 - - transcription factor, putative [Ricinus communis]
13 Hb_000160_060 0.1439300426 - - unknown [Populus trichocarpa]
14 Hb_014720_040 0.1443631061 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
15 Hb_006360_030 0.14511821 - - -
16 Hb_002687_130 0.1472579185 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]
17 Hb_003540_240 0.1476176497 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
18 Hb_000836_470 0.1492954035 - - -
19 Hb_003666_030 0.1500455979 - - Thiol:disulfide interchange protein txlA, putative [Ricinus communis]
20 Hb_002338_060 0.1503323487 - - 2Fe-2S ferredoxin [Glycine soja]

Gene co-expression network

sample Hb_000679_050 Hb_000679_050 Hb_000030_180 Hb_000030_180 Hb_000679_050--Hb_000030_180 Hb_006694_020 Hb_006694_020 Hb_000679_050--Hb_006694_020 Hb_001329_290 Hb_001329_290 Hb_000679_050--Hb_001329_290 Hb_000265_240 Hb_000265_240 Hb_000679_050--Hb_000265_240 Hb_001234_080 Hb_001234_080 Hb_000679_050--Hb_001234_080 Hb_004449_170 Hb_004449_170 Hb_000679_050--Hb_004449_170 Hb_000030_180--Hb_001234_080 Hb_009694_010 Hb_009694_010 Hb_000030_180--Hb_009694_010 Hb_004837_030 Hb_004837_030 Hb_000030_180--Hb_004837_030 Hb_004096_090 Hb_004096_090 Hb_000030_180--Hb_004096_090 Hb_028227_020 Hb_028227_020 Hb_000030_180--Hb_028227_020 Hb_002112_020 Hb_002112_020 Hb_000030_180--Hb_002112_020 Hb_006694_020--Hb_004837_030 Hb_006694_020--Hb_000030_180 Hb_007763_040 Hb_007763_040 Hb_006694_020--Hb_007763_040 Hb_006694_020--Hb_001234_080 Hb_006694_020--Hb_009694_010 Hb_001329_290--Hb_004449_170 Hb_000286_070 Hb_000286_070 Hb_001329_290--Hb_000286_070 Hb_004787_060 Hb_004787_060 Hb_001329_290--Hb_004787_060 Hb_001564_130 Hb_001564_130 Hb_001329_290--Hb_001564_130 Hb_003292_040 Hb_003292_040 Hb_001329_290--Hb_003292_040 Hb_001329_290--Hb_000265_240 Hb_000265_240--Hb_001564_130 Hb_000265_240--Hb_004449_170 Hb_000377_070 Hb_000377_070 Hb_000265_240--Hb_000377_070 Hb_030565_080 Hb_030565_080 Hb_000265_240--Hb_030565_080 Hb_000265_240--Hb_003292_040 Hb_001234_080--Hb_028227_020 Hb_000960_060 Hb_000960_060 Hb_001234_080--Hb_000960_060 Hb_001489_060 Hb_001489_060 Hb_001234_080--Hb_001489_060 Hb_001234_080--Hb_009694_010 Hb_001512_060 Hb_001512_060 Hb_001234_080--Hb_001512_060 Hb_001234_080--Hb_001564_130 Hb_002477_300 Hb_002477_300 Hb_004449_170--Hb_002477_300 Hb_005588_030 Hb_005588_030 Hb_004449_170--Hb_005588_030 Hb_004449_170--Hb_004787_060 Hb_004449_170--Hb_001512_060 Hb_004449_170--Hb_000286_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0904 13.6811 49.331 24.6773 58.6347 56.8186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.8563 122.002 20.1005 21.9282 49.019

CAGE analysis