Hb_000735_180

Information

Type -
Description -
Location Contig735: 199928-212122
Sequence    

Annotation

kegg
ID tcc:TCM_002752
description Oxidoreductase, zinc-binding dehydrogenase family protein
nr
ID XP_012085318.1
description PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
swissprot
ID Q9SV68
description Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1
trembl
ID A0A061DLX9
description Oxidoreductase, zinc-binding dehydrogenase family protein OS=Theobroma cacao GN=TCM_002752 PE=4 SV=1
Gene Ontology
ID GO:0005773
description quinone-oxidoreductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56201: 200023-203019
cDNA
(Sanger)
(ID:Location)		 034_D21.ab1: 200025-202417 , 048_J13.ab1: 200025-202380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000735_180 0.0 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
2 Hb_000053_130 0.1008403829 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
3 Hb_054865_120 0.1030137178 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
4 Hb_007763_040 0.1054664439 - - -
5 Hb_004109_280 0.1096729978 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
6 Hb_012092_010 0.1165218137 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
7 Hb_001124_120 0.1184040188 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
8 Hb_002349_040 0.1205767619 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
9 Hb_000046_280 0.1212331898 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
10 Hb_006269_020 0.1220639774 - - autophagy protein, putative [Ricinus communis]
11 Hb_004837_030 0.1234964024 - - PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Jatropha curcas]
12 Hb_028227_020 0.1235237432 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
13 Hb_002805_270 0.1241160528 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_009545_080 0.1248565178 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
15 Hb_004837_190 0.1250811859 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
16 Hb_002154_120 0.1250997013 - - PREDICTED: uncharacterized protein LOC105630563 [Jatropha curcas]
17 Hb_003030_070 0.1256586459 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
18 Hb_000494_040 0.1271672626 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
19 Hb_009803_040 0.1284960371 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
20 Hb_150360_030 0.1287499726 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]

Gene co-expression network

sample Hb_000735_180 Hb_000735_180 Hb_000053_130 Hb_000053_130 Hb_000735_180--Hb_000053_130 Hb_054865_120 Hb_054865_120 Hb_000735_180--Hb_054865_120 Hb_007763_040 Hb_007763_040 Hb_000735_180--Hb_007763_040 Hb_004109_280 Hb_004109_280 Hb_000735_180--Hb_004109_280 Hb_012092_010 Hb_012092_010 Hb_000735_180--Hb_012092_010 Hb_001124_120 Hb_001124_120 Hb_000735_180--Hb_001124_120 Hb_150360_030 Hb_150360_030 Hb_000053_130--Hb_150360_030 Hb_000076_120 Hb_000076_120 Hb_000053_130--Hb_000076_120 Hb_000058_100 Hb_000058_100 Hb_000053_130--Hb_000058_100 Hb_000053_130--Hb_054865_120 Hb_000299_040 Hb_000299_040 Hb_000053_130--Hb_000299_040 Hb_000094_300 Hb_000094_300 Hb_000053_130--Hb_000094_300 Hb_000025_470 Hb_000025_470 Hb_054865_120--Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_054865_120--Hb_002728_070 Hb_003688_130 Hb_003688_130 Hb_054865_120--Hb_003688_130 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_008748_040 Hb_008748_040 Hb_054865_120--Hb_008748_040 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170 Hb_000670_020 Hb_000670_020 Hb_007763_040--Hb_000670_020 Hb_003683_050 Hb_003683_050 Hb_007763_040--Hb_003683_050 Hb_010368_020 Hb_010368_020 Hb_007763_040--Hb_010368_020 Hb_005016_090 Hb_005016_090 Hb_007763_040--Hb_005016_090 Hb_000714_030 Hb_000714_030 Hb_007763_040--Hb_000714_030 Hb_001564_130 Hb_001564_130 Hb_007763_040--Hb_001564_130 Hb_002997_080 Hb_002997_080 Hb_004109_280--Hb_002997_080 Hb_009545_080 Hb_009545_080 Hb_004109_280--Hb_009545_080 Hb_000260_100 Hb_000260_100 Hb_004109_280--Hb_000260_100 Hb_002272_130 Hb_002272_130 Hb_004109_280--Hb_002272_130 Hb_027472_120 Hb_027472_120 Hb_004109_280--Hb_027472_120 Hb_000883_020 Hb_000883_020 Hb_004109_280--Hb_000883_020 Hb_000465_430 Hb_000465_430 Hb_012092_010--Hb_000465_430 Hb_002391_300 Hb_002391_300 Hb_012092_010--Hb_002391_300 Hb_002495_040 Hb_002495_040 Hb_012092_010--Hb_002495_040 Hb_003030_070 Hb_003030_070 Hb_012092_010--Hb_003030_070 Hb_001936_080 Hb_001936_080 Hb_012092_010--Hb_001936_080 Hb_001195_760 Hb_001195_760 Hb_012092_010--Hb_001195_760 Hb_000085_060 Hb_000085_060 Hb_001124_120--Hb_000085_060 Hb_001124_120--Hb_150360_030 Hb_002349_040 Hb_002349_040 Hb_001124_120--Hb_002349_040 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_031939_010 Hb_031939_010 Hb_001124_120--Hb_031939_010 Hb_007218_080 Hb_007218_080 Hb_001124_120--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5515 12.8732 44.4131 21.9174 65.9811 52.7914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.7377 36.2078 29.3934 15.5325 25.7042

CAGE analysis