Hb_006269_020

Information

Type -
Description -
Location Contig6269: 27904-32961
Sequence    

Annotation

kegg
ID rcu:RCOM_1014720
description autophagy protein, putative
nr
ID XP_002522565.1
description autophagy protein, putative [Ricinus communis]
swissprot
ID Q94CD5
description Ubiquitin-like modifier-activating enzyme atg7 OS=Arabidopsis thaliana GN=ATG7 PE=1 SV=1
trembl
ID B9S996
description Autophagy protein, putative OS=Ricinus communis GN=RCOM_1014720 PE=4 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin-like modifier-activating enzyme atg7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006269_020 0.0 - - autophagy protein, putative [Ricinus communis]
2 Hb_002529_060 0.121943919 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
3 Hb_000735_180 0.1220639774 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
4 Hb_001481_170 0.1264749163 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004884_070 0.1303857649 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
6 Hb_001135_060 0.1342216518 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
7 Hb_033642_030 0.1343147641 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
8 Hb_082821_010 0.1352408026 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
9 Hb_144166_010 0.1382359578 - - PREDICTED: importin-13 [Jatropha curcas]
10 Hb_012022_160 0.1383960015 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
11 Hb_030312_080 0.1385670798 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
12 Hb_000915_110 0.1417432463 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
13 Hb_002947_030 0.1419356495 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
14 Hb_001348_180 0.1425997045 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
15 Hb_003683_050 0.1437796242 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
16 Hb_163950_030 0.1438044013 - - PREDICTED: uncharacterized protein LOC105648509 isoform X1 [Jatropha curcas]
17 Hb_003580_030 0.1457810309 - - fimbrin, putative [Ricinus communis]
18 Hb_003030_070 0.1460345762 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
19 Hb_090051_030 0.1462204101 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
20 Hb_007763_040 0.1469746164 - - -

Gene co-expression network

sample Hb_006269_020 Hb_006269_020 Hb_002529_060 Hb_002529_060 Hb_006269_020--Hb_002529_060 Hb_000735_180 Hb_000735_180 Hb_006269_020--Hb_000735_180 Hb_001481_170 Hb_001481_170 Hb_006269_020--Hb_001481_170 Hb_004884_070 Hb_004884_070 Hb_006269_020--Hb_004884_070 Hb_001135_060 Hb_001135_060 Hb_006269_020--Hb_001135_060 Hb_033642_030 Hb_033642_030 Hb_006269_020--Hb_033642_030 Hb_006816_390 Hb_006816_390 Hb_002529_060--Hb_006816_390 Hb_000645_050 Hb_000645_050 Hb_002529_060--Hb_000645_050 Hb_000465_430 Hb_000465_430 Hb_002529_060--Hb_000465_430 Hb_002495_040 Hb_002495_040 Hb_002529_060--Hb_002495_040 Hb_003502_080 Hb_003502_080 Hb_002529_060--Hb_003502_080 Hb_000322_100 Hb_000322_100 Hb_002529_060--Hb_000322_100 Hb_000053_130 Hb_000053_130 Hb_000735_180--Hb_000053_130 Hb_054865_120 Hb_054865_120 Hb_000735_180--Hb_054865_120 Hb_007763_040 Hb_007763_040 Hb_000735_180--Hb_007763_040 Hb_004109_280 Hb_004109_280 Hb_000735_180--Hb_004109_280 Hb_012092_010 Hb_012092_010 Hb_000735_180--Hb_012092_010 Hb_001124_120 Hb_001124_120 Hb_000735_180--Hb_001124_120 Hb_003683_050 Hb_003683_050 Hb_001481_170--Hb_003683_050 Hb_001195_760 Hb_001195_760 Hb_001481_170--Hb_001195_760 Hb_001305_010 Hb_001305_010 Hb_001481_170--Hb_001305_010 Hb_000451_010 Hb_000451_010 Hb_001481_170--Hb_000451_010 Hb_012022_160 Hb_012022_160 Hb_001481_170--Hb_012022_160 Hb_000302_010 Hb_000302_010 Hb_001481_170--Hb_000302_010 Hb_000690_160 Hb_000690_160 Hb_004884_070--Hb_000690_160 Hb_002374_240 Hb_002374_240 Hb_004884_070--Hb_002374_240 Hb_001322_140 Hb_001322_140 Hb_004884_070--Hb_001322_140 Hb_001001_080 Hb_001001_080 Hb_004884_070--Hb_001001_080 Hb_000753_240 Hb_000753_240 Hb_004884_070--Hb_000753_240 Hb_000866_010 Hb_000866_010 Hb_004884_070--Hb_000866_010 Hb_000606_090 Hb_000606_090 Hb_001135_060--Hb_000606_090 Hb_001135_060--Hb_033642_030 Hb_000494_040 Hb_000494_040 Hb_001135_060--Hb_000494_040 Hb_032050_040 Hb_032050_040 Hb_001135_060--Hb_032050_040 Hb_002716_130 Hb_002716_130 Hb_001135_060--Hb_002716_130 Hb_003665_060 Hb_003665_060 Hb_001135_060--Hb_003665_060 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_002272_130 Hb_002272_130 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000200_380 Hb_000200_380 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.578976 0.512966 0.991058 0.927092 1.51859 1.30854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00837 0.793445 0.828562 0.136025 0.659754

CAGE analysis