Hb_001999_150

Information

Type -
Description -
Location Contig1999: 153547-155430
Sequence    

Annotation

kegg
ID rcu:RCOM_0611760
description 60S acidic ribosomal protein P0, putative (EC:4.2.99.18)
nr
ID XP_002525622.1
description 60S acidic ribosomal protein P0, putative [Ricinus communis]
swissprot
ID O04204
description 60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=1 SV=1
trembl
ID B9SI03
description 60S acidic ribosomal protein P0, putative OS=Ricinus communis GN=RCOM_0611760 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein p0

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_150 0.0 - - 60S acidic ribosomal protein P0, putative [Ricinus communis]
2 Hb_030429_010 0.1746452647 - - hypothetical protein POPTR_0001s44580g [Populus trichocarpa]
3 Hb_000414_070 0.1810479678 - - -
4 Hb_005862_030 0.1885434131 - - -
5 Hb_002539_080 0.1896921086 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
6 Hb_002735_060 0.19194956 - - PREDICTED: desumoylating isopeptidase 1 [Jatropha curcas]
7 Hb_002681_110 0.1939105651 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
8 Hb_157022_020 0.1958427051 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
9 Hb_004077_030 0.1966074138 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
10 Hb_004659_120 0.1972577238 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
11 Hb_000424_250 0.1984769869 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
12 Hb_005955_020 0.1996650167 - - ring finger containing protein, putative [Ricinus communis]
13 Hb_001584_300 0.200954904 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
14 Hb_001677_110 0.2029560298 - - Protein YIPF1, putative [Ricinus communis]
15 Hb_000085_250 0.2033274505 - - sodium/hydrogen exchanger, putative [Ricinus communis]
16 Hb_002282_020 0.2045904352 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
17 Hb_006501_110 0.2073082147 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
18 Hb_004787_090 0.2079570022 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
19 Hb_000345_040 0.2080123253 rubber biosynthesis Gene Name: REF4 -
20 Hb_000115_060 0.2100956351 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]

Gene co-expression network

sample Hb_001999_150 Hb_001999_150 Hb_030429_010 Hb_030429_010 Hb_001999_150--Hb_030429_010 Hb_000414_070 Hb_000414_070 Hb_001999_150--Hb_000414_070 Hb_005862_030 Hb_005862_030 Hb_001999_150--Hb_005862_030 Hb_002539_080 Hb_002539_080 Hb_001999_150--Hb_002539_080 Hb_002735_060 Hb_002735_060 Hb_001999_150--Hb_002735_060 Hb_002681_110 Hb_002681_110 Hb_001999_150--Hb_002681_110 Hb_030429_010--Hb_000414_070 Hb_000085_250 Hb_000085_250 Hb_030429_010--Hb_000085_250 Hb_004787_090 Hb_004787_090 Hb_030429_010--Hb_004787_090 Hb_000205_110 Hb_000205_110 Hb_030429_010--Hb_000205_110 Hb_002214_050 Hb_002214_050 Hb_030429_010--Hb_002214_050 Hb_000787_140 Hb_000787_140 Hb_000414_070--Hb_000787_140 Hb_002078_050 Hb_002078_050 Hb_000414_070--Hb_002078_050 Hb_004453_150 Hb_004453_150 Hb_000414_070--Hb_004453_150 Hb_001718_100 Hb_001718_100 Hb_000414_070--Hb_001718_100 Hb_071736_020 Hb_071736_020 Hb_000414_070--Hb_071736_020 Hb_001437_230 Hb_001437_230 Hb_000414_070--Hb_001437_230 Hb_005862_030--Hb_002539_080 Hb_001912_010 Hb_001912_010 Hb_005862_030--Hb_001912_010 Hb_001439_170 Hb_001439_170 Hb_005862_030--Hb_001439_170 Hb_024714_060 Hb_024714_060 Hb_005862_030--Hb_024714_060 Hb_000012_130 Hb_000012_130 Hb_005862_030--Hb_000012_130 Hb_009265_060 Hb_009265_060 Hb_005862_030--Hb_009265_060 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_001711_030 Hb_001711_030 Hb_002539_080--Hb_001711_030 Hb_002527_070 Hb_002527_070 Hb_002539_080--Hb_002527_070 Hb_002539_080--Hb_002735_060 Hb_001863_480 Hb_001863_480 Hb_002539_080--Hb_001863_480 Hb_002539_080--Hb_001439_170 Hb_157022_020 Hb_157022_020 Hb_002735_060--Hb_157022_020 Hb_162275_030 Hb_162275_030 Hb_002735_060--Hb_162275_030 Hb_092100_020 Hb_092100_020 Hb_002735_060--Hb_092100_020 Hb_002735_060--Hb_001863_480 Hb_002716_070 Hb_002716_070 Hb_002735_060--Hb_002716_070 Hb_000029_030 Hb_000029_030 Hb_002681_110--Hb_000029_030 Hb_002681_110--Hb_157022_020 Hb_000115_060 Hb_000115_060 Hb_002681_110--Hb_000115_060 Hb_002681_110--Hb_071736_020 Hb_000317_030 Hb_000317_030 Hb_002681_110--Hb_000317_030 Hb_007919_050 Hb_007919_050 Hb_002681_110--Hb_007919_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0287784 0 0.0172382 0.0399874 0.0646855 0.040542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105423 0.041456 0.0761436 0.0166844 0

CAGE analysis