Hb_002078_050

Information

Type -
Description -
Location Contig2078: 34299-39091
Sequence    

Annotation

kegg
ID sot:102589322
description protein kish-like
nr
ID XP_009629041.1
description PREDICTED: protein kish-like [Nicotiana tomentosiformis]
swissprot
ID Q9VWH8
description Protein kish OS=Drosophila melanogaster GN=ksh PE=3 SV=2
trembl
ID K4C852
description Protein kish OS=Solanum lycopersicum GN=Solyc06g068780.2 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein kish

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21407: 29905-33492 , PASA_asmbl_21409: 38695-39131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002078_050 0.0 - - PREDICTED: protein kish-like [Nicotiana tomentosiformis]
2 Hb_011161_040 0.0907945288 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
3 Hb_000152_430 0.0926949266 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
4 Hb_002078_450 0.1011641241 - - nuclear transport factor, putative [Ricinus communis]
5 Hb_000089_130 0.1035395775 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
6 Hb_001427_120 0.1048558072 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
7 Hb_001718_100 0.1048874038 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
8 Hb_011139_020 0.1055955775 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
9 Hb_000923_070 0.106798627 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000956_010 0.1069878126 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
11 Hb_008173_120 0.1086411347 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000318_380 0.1095923479 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
13 Hb_007747_090 0.1095954456 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
14 Hb_071736_020 0.1108995123 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
15 Hb_000376_050 0.1112252352 - - polyadenylate-binding protein, putative [Ricinus communis]
16 Hb_002025_320 0.1121455398 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
17 Hb_000032_540 0.1122215895 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
18 Hb_001019_090 0.1127720375 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
19 Hb_001258_080 0.1138604149 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
20 Hb_143813_010 0.1138799929 - - PREDICTED: 60S ribosomal protein L13-1 [Nelumbo nucifera]

Gene co-expression network

sample Hb_002078_050 Hb_002078_050 Hb_011161_040 Hb_011161_040 Hb_002078_050--Hb_011161_040 Hb_000152_430 Hb_000152_430 Hb_002078_050--Hb_000152_430 Hb_002078_450 Hb_002078_450 Hb_002078_050--Hb_002078_450 Hb_000089_130 Hb_000089_130 Hb_002078_050--Hb_000089_130 Hb_001427_120 Hb_001427_120 Hb_002078_050--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_002078_050--Hb_001718_100 Hb_004453_150 Hb_004453_150 Hb_011161_040--Hb_004453_150 Hb_011139_020 Hb_011139_020 Hb_011161_040--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_011161_040--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_011161_040--Hb_025193_050 Hb_011161_040--Hb_000152_430 Hb_001133_020 Hb_001133_020 Hb_011161_040--Hb_001133_020 Hb_000152_430--Hb_011139_020 Hb_000318_380 Hb_000318_380 Hb_000152_430--Hb_000318_380 Hb_000152_430--Hb_001019_090 Hb_000152_430--Hb_025193_050 Hb_024650_050 Hb_024650_050 Hb_000152_430--Hb_024650_050 Hb_000928_240 Hb_000928_240 Hb_000152_430--Hb_000928_240 Hb_071736_020 Hb_071736_020 Hb_002078_450--Hb_071736_020 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_000086_570 Hb_000086_570 Hb_002078_450--Hb_000086_570 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040 Hb_001454_330 Hb_001454_330 Hb_000089_130--Hb_001454_330 Hb_009026_050 Hb_009026_050 Hb_000089_130--Hb_009026_050 Hb_000563_590 Hb_000563_590 Hb_000089_130--Hb_000563_590 Hb_000089_130--Hb_011139_020 Hb_000089_130--Hb_000152_430 Hb_000089_130--Hb_001019_090 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_001427_120--Hb_001718_100 Hb_001427_120--Hb_000086_570 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_001427_120--Hb_071736_020 Hb_001427_120--Hb_022250_040 Hb_001718_100--Hb_071736_020 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.01851 2.13214 1.21043 4.03182 8.52013 15.1854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8257 18.307 12.3659 3.75357 0.3096

CAGE analysis