Hb_000414_070

Information

Type -
Description -
Location Contig414: 108956-123306
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40996: 108812-110539 , PASA_asmbl_40998: 120283-120729 , PASA_asmbl_40999: 121128-121349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_070 0.0 - - -
2 Hb_000787_140 0.12684872 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
3 Hb_002078_050 0.1343077478 - - PREDICTED: protein kish-like [Nicotiana tomentosiformis]
4 Hb_004453_150 0.1350628376 - - BnaC02g13240D [Brassica napus]
5 Hb_001718_100 0.1366534072 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
6 Hb_071736_020 0.1372307105 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
7 Hb_001437_230 0.1422726348 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
8 Hb_000427_110 0.1449713769 - - PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Jatropha curcas]
9 Hb_011161_040 0.1454548267 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
10 Hb_000172_030 0.1463326403 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
11 Hb_002078_450 0.146840433 - - nuclear transport factor, putative [Ricinus communis]
12 Hb_001258_080 0.1492432181 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
13 Hb_001246_100 0.1504567794 - - Ras-related small GTP-binding family protein [Theobroma cacao]
14 Hb_000001_050 0.1520251867 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
15 Hb_008173_120 0.1524621928 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001677_110 0.1536265189 - - Protein YIPF1, putative [Ricinus communis]
17 Hb_001427_120 0.1536775061 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
18 Hb_000956_010 0.153889139 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
19 Hb_142898_010 0.1540276986 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002025_320 0.1544486301 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]

Gene co-expression network

sample Hb_000414_070 Hb_000414_070 Hb_000787_140 Hb_000787_140 Hb_000414_070--Hb_000787_140 Hb_002078_050 Hb_002078_050 Hb_000414_070--Hb_002078_050 Hb_004453_150 Hb_004453_150 Hb_000414_070--Hb_004453_150 Hb_001718_100 Hb_001718_100 Hb_000414_070--Hb_001718_100 Hb_071736_020 Hb_071736_020 Hb_000414_070--Hb_071736_020 Hb_001437_230 Hb_001437_230 Hb_000414_070--Hb_001437_230 Hb_000172_030 Hb_000172_030 Hb_000787_140--Hb_000172_030 Hb_000787_140--Hb_001437_230 Hb_004032_100 Hb_004032_100 Hb_000787_140--Hb_004032_100 Hb_000087_020 Hb_000087_020 Hb_000787_140--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_000787_140--Hb_000024_080 Hb_000751_130 Hb_000751_130 Hb_000787_140--Hb_000751_130 Hb_011161_040 Hb_011161_040 Hb_002078_050--Hb_011161_040 Hb_000152_430 Hb_000152_430 Hb_002078_050--Hb_000152_430 Hb_002078_450 Hb_002078_450 Hb_002078_050--Hb_002078_450 Hb_000089_130 Hb_000089_130 Hb_002078_050--Hb_000089_130 Hb_001427_120 Hb_001427_120 Hb_002078_050--Hb_001427_120 Hb_002078_050--Hb_001718_100 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_004453_150--Hb_011161_040 Hb_025193_050 Hb_025193_050 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_001718_100--Hb_001427_120 Hb_001718_100--Hb_071736_020 Hb_001718_100--Hb_002078_450 Hb_000086_570 Hb_000086_570 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_071736_020--Hb_002078_450 Hb_071736_020--Hb_000086_570 Hb_071736_020--Hb_001427_120 Hb_000975_290 Hb_000975_290 Hb_071736_020--Hb_000975_290 Hb_021650_030 Hb_021650_030 Hb_071736_020--Hb_021650_030 Hb_001437_230--Hb_000172_030 Hb_003927_130 Hb_003927_130 Hb_001437_230--Hb_003927_130 Hb_001437_230--Hb_000751_130 Hb_000085_320 Hb_000085_320 Hb_001437_230--Hb_000085_320 Hb_001258_080 Hb_001258_080 Hb_001437_230--Hb_001258_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258286 0.0676007 0.136519 0.268535 0.456851 0.794288
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.771675 0.647374 0.669726 0.195312 0

CAGE analysis