Hb_000205_110

Information

Type -
Description -
Location Contig205: 174828-177445
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04420g
description POPTRDRAFT_1096654; hypothetical protein
nr
ID XP_011038504.1
description PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I5P0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04420g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21106: 176843-177387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_110 0.0 - - PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X2 [Populus euphratica]
2 Hb_000414_070 0.1603235031 - - -
3 Hb_000787_140 0.1646011061 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
4 Hb_000199_070 0.1679941537 - - conserved hypothetical protein [Ricinus communis]
5 Hb_098315_120 0.1689876033 - - -
6 Hb_093666_020 0.170686652 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
7 Hb_014324_030 0.1716528195 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
8 Hb_007317_060 0.1740526765 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
9 Hb_005224_050 0.1744855905 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
10 Hb_001629_100 0.1773575942 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
11 Hb_008847_020 0.1791229319 - - 40S ribosomal protein S17C [Hevea brasiliensis]
12 Hb_009554_010 0.1792298545 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
13 Hb_012515_010 0.1798198215 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
14 Hb_000505_140 0.1798503472 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
15 Hb_003687_020 0.1802255868 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
16 Hb_000815_260 0.1804004466 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
17 Hb_007441_270 0.1814146271 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
18 Hb_011161_050 0.181778553 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
19 Hb_000684_230 0.1842988905 - - 40S ribosomal protein S23, putative [Ricinus communis]
20 Hb_001258_080 0.184528796 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]

Gene co-expression network

sample Hb_000205_110 Hb_000205_110 Hb_000414_070 Hb_000414_070 Hb_000205_110--Hb_000414_070 Hb_000787_140 Hb_000787_140 Hb_000205_110--Hb_000787_140 Hb_000199_070 Hb_000199_070 Hb_000205_110--Hb_000199_070 Hb_098315_120 Hb_098315_120 Hb_000205_110--Hb_098315_120 Hb_093666_020 Hb_093666_020 Hb_000205_110--Hb_093666_020 Hb_014324_030 Hb_014324_030 Hb_000205_110--Hb_014324_030 Hb_000414_070--Hb_000787_140 Hb_002078_050 Hb_002078_050 Hb_000414_070--Hb_002078_050 Hb_004453_150 Hb_004453_150 Hb_000414_070--Hb_004453_150 Hb_001718_100 Hb_001718_100 Hb_000414_070--Hb_001718_100 Hb_071736_020 Hb_071736_020 Hb_000414_070--Hb_071736_020 Hb_001437_230 Hb_001437_230 Hb_000414_070--Hb_001437_230 Hb_000172_030 Hb_000172_030 Hb_000787_140--Hb_000172_030 Hb_000787_140--Hb_001437_230 Hb_004032_100 Hb_004032_100 Hb_000787_140--Hb_004032_100 Hb_000087_020 Hb_000087_020 Hb_000787_140--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_000787_140--Hb_000024_080 Hb_000751_130 Hb_000751_130 Hb_000787_140--Hb_000751_130 Hb_003058_220 Hb_003058_220 Hb_000199_070--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000199_070--Hb_011161_050 Hb_002701_050 Hb_002701_050 Hb_000199_070--Hb_002701_050 Hb_008847_020 Hb_008847_020 Hb_000199_070--Hb_008847_020 Hb_130291_010 Hb_130291_010 Hb_000199_070--Hb_130291_010 Hb_021409_090 Hb_021409_090 Hb_000199_070--Hb_021409_090 Hb_098315_120--Hb_008847_020 Hb_001629_100 Hb_001629_100 Hb_098315_120--Hb_001629_100 Hb_098315_120--Hb_130291_010 Hb_000184_050 Hb_000184_050 Hb_098315_120--Hb_000184_050 Hb_012265_010 Hb_012265_010 Hb_098315_120--Hb_012265_010 Hb_011139_020 Hb_011139_020 Hb_098315_120--Hb_011139_020 Hb_003011_040 Hb_003011_040 Hb_093666_020--Hb_003011_040 Hb_004223_220 Hb_004223_220 Hb_093666_020--Hb_004223_220 Hb_001279_070 Hb_001279_070 Hb_093666_020--Hb_001279_070 Hb_004502_020 Hb_004502_020 Hb_093666_020--Hb_004502_020 Hb_001269_320 Hb_001269_320 Hb_093666_020--Hb_001269_320 Hb_000505_140 Hb_000505_140 Hb_093666_020--Hb_000505_140 Hb_014324_030--Hb_002701_050 Hb_001155_030 Hb_001155_030 Hb_014324_030--Hb_001155_030 Hb_001048_020 Hb_001048_020 Hb_014324_030--Hb_001048_020 Hb_000792_130 Hb_000792_130 Hb_014324_030--Hb_000792_130 Hb_007441_270 Hb_007441_270 Hb_014324_030--Hb_007441_270 Hb_000917_110 Hb_000917_110 Hb_014324_030--Hb_000917_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.262529 0 0.161582 0.345091 0.369576 0.762938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.725261 1.01362 0.452307 0.412363 0

CAGE analysis