Hb_014324_030

Information

Type -
Description -
Location Contig14324: 7066-8367
Sequence    

Annotation

kegg
ID fve:101313951
description (R)-specific enoyl-CoA hydratase-like
nr
ID XP_004309889.1
description PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID B9SK30
description Oxidoreductase, putative OS=Ricinus communis GN=RCOM_1399350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11387: 7429-7755
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014324_030 0.0 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
2 Hb_002701_050 0.1542826143 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
3 Hb_001155_030 0.1569412761 - - 60S ribosomal protein L10A [Hevea brasiliensis]
4 Hb_001048_020 0.1627457715 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
5 Hb_000792_130 0.1642573089 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
6 Hb_007441_270 0.1666461395 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
7 Hb_000917_110 0.1670041856 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
8 Hb_000108_140 0.1677219605 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
9 Hb_000500_060 0.1680893404 - - BnaC08g21190D [Brassica napus]
10 Hb_000815_260 0.1686958092 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
11 Hb_001214_160 0.1691798982 - - 60S ribosomal protein L27B [Hevea brasiliensis]
12 Hb_000526_040 0.1716425654 - - 60S ribosomal protein L6, putative [Ricinus communis]
13 Hb_000205_110 0.1716528195 - - PREDICTED: protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X2 [Populus euphratica]
14 Hb_004007_100 0.171741266 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
15 Hb_001242_110 0.1720234594 - - 40S ribosomal protein S18, putative [Ricinus communis]
16 Hb_000152_420 0.1727058587 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
17 Hb_000227_230 0.1732209015 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
18 Hb_031042_010 0.1732508998 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
19 Hb_000707_030 0.1732612445 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
20 Hb_000028_140 0.174099834 - - surfeit locus protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_014324_030 Hb_014324_030 Hb_002701_050 Hb_002701_050 Hb_014324_030--Hb_002701_050 Hb_001155_030 Hb_001155_030 Hb_014324_030--Hb_001155_030 Hb_001048_020 Hb_001048_020 Hb_014324_030--Hb_001048_020 Hb_000792_130 Hb_000792_130 Hb_014324_030--Hb_000792_130 Hb_007441_270 Hb_007441_270 Hb_014324_030--Hb_007441_270 Hb_000917_110 Hb_000917_110 Hb_014324_030--Hb_000917_110 Hb_004007_100 Hb_004007_100 Hb_002701_050--Hb_004007_100 Hb_000199_070 Hb_000199_070 Hb_002701_050--Hb_000199_070 Hb_015175_030 Hb_015175_030 Hb_002701_050--Hb_015175_030 Hb_001242_110 Hb_001242_110 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_148209_080 Hb_148209_080 Hb_002701_050--Hb_148209_080 Hb_000028_140 Hb_000028_140 Hb_001155_030--Hb_000028_140 Hb_001829_060 Hb_001829_060 Hb_001155_030--Hb_001829_060 Hb_006641_010 Hb_006641_010 Hb_001155_030--Hb_006641_010 Hb_001155_030--Hb_001242_110 Hb_005731_170 Hb_005731_170 Hb_001155_030--Hb_005731_170 Hb_009666_040 Hb_009666_040 Hb_001155_030--Hb_009666_040 Hb_003615_010 Hb_003615_010 Hb_001048_020--Hb_003615_010 Hb_000613_140 Hb_000613_140 Hb_001048_020--Hb_000613_140 Hb_001226_160 Hb_001226_160 Hb_001048_020--Hb_001226_160 Hb_000510_130 Hb_000510_130 Hb_001048_020--Hb_000510_130 Hb_001252_110 Hb_001252_110 Hb_001048_020--Hb_001252_110 Hb_023732_070 Hb_023732_070 Hb_001048_020--Hb_023732_070 Hb_000152_420 Hb_000152_420 Hb_000792_130--Hb_000152_420 Hb_000102_020 Hb_000102_020 Hb_000792_130--Hb_000102_020 Hb_000656_170 Hb_000656_170 Hb_000792_130--Hb_000656_170 Hb_005054_350 Hb_005054_350 Hb_000792_130--Hb_005054_350 Hb_002662_030 Hb_002662_030 Hb_000792_130--Hb_002662_030 Hb_000982_090 Hb_000982_090 Hb_000792_130--Hb_000982_090 Hb_000003_730 Hb_000003_730 Hb_007441_270--Hb_000003_730 Hb_000684_230 Hb_000684_230 Hb_007441_270--Hb_000684_230 Hb_067776_010 Hb_067776_010 Hb_007441_270--Hb_067776_010 Hb_001269_320 Hb_001269_320 Hb_007441_270--Hb_001269_320 Hb_004502_020 Hb_004502_020 Hb_007441_270--Hb_004502_020 Hb_000500_060 Hb_000500_060 Hb_007441_270--Hb_000500_060 Hb_046049_010 Hb_046049_010 Hb_000917_110--Hb_046049_010 Hb_009793_010 Hb_009793_010 Hb_000917_110--Hb_009793_010 Hb_114893_030 Hb_114893_030 Hb_000917_110--Hb_114893_030 Hb_000007_100 Hb_000007_100 Hb_000917_110--Hb_000007_100 Hb_004800_230 Hb_004800_230 Hb_000917_110--Hb_004800_230 Hb_015279_010 Hb_015279_010 Hb_000917_110--Hb_015279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0996755 0.0558853 0.104946 0.11944 0.0979493 0.300562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153277 0.361514 0.215953 0.171321 0

CAGE analysis