Hb_002582_070

Information

Type -
Description -
Location Contig2582: 132481-133431
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002582_070 0.0 - - -
2 Hb_051017_010 0.185575603 - - Uncharacterized protein TCM_031047 [Theobroma cacao]
3 Hb_005271_020 0.1977012851 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
4 Hb_001999_150 0.2124648762 - - 60S acidic ribosomal protein P0, putative [Ricinus communis]
5 Hb_001421_020 0.2181462005 - - hypothetical protein F383_00667 [Gossypium arboreum]
6 Hb_000465_040 0.2236644253 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
7 Hb_000424_250 0.230910624 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
8 Hb_011257_010 0.2318038203 - - -
9 Hb_116420_030 0.2333446455 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
10 Hb_000414_070 0.2358577561 - - -
11 Hb_003580_030 0.2378141869 - - fimbrin, putative [Ricinus communis]
12 Hb_000243_040 0.2410578652 - - -
13 Hb_024505_020 0.2420851669 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
14 Hb_001502_070 0.2427363014 - - X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]
15 Hb_078185_010 0.2427857199 - - -
16 Hb_004195_230 0.2452735571 - - conserved hypothetical protein [Ricinus communis]
17 Hb_010931_090 0.2453165079 - - conserved hypothetical protein [Ricinus communis]
18 Hb_184134_010 0.2455596486 - - PREDICTED: variable charge X-linked protein 3B [Jatropha curcas]
19 Hb_019516_020 0.2471181742 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004195_210 0.2471730647 - - -

Gene co-expression network

sample Hb_002582_070 Hb_002582_070 Hb_051017_010 Hb_051017_010 Hb_002582_070--Hb_051017_010 Hb_005271_020 Hb_005271_020 Hb_002582_070--Hb_005271_020 Hb_001999_150 Hb_001999_150 Hb_002582_070--Hb_001999_150 Hb_001421_020 Hb_001421_020 Hb_002582_070--Hb_001421_020 Hb_000465_040 Hb_000465_040 Hb_002582_070--Hb_000465_040 Hb_000424_250 Hb_000424_250 Hb_002582_070--Hb_000424_250 Hb_005928_080 Hb_005928_080 Hb_051017_010--Hb_005928_080 Hb_001247_170 Hb_001247_170 Hb_051017_010--Hb_001247_170 Hb_184134_010 Hb_184134_010 Hb_051017_010--Hb_184134_010 Hb_051017_010--Hb_005271_020 Hb_003580_030 Hb_003580_030 Hb_051017_010--Hb_003580_030 Hb_002228_100 Hb_002228_100 Hb_005271_020--Hb_002228_100 Hb_002027_020 Hb_002027_020 Hb_005271_020--Hb_002027_020 Hb_068922_010 Hb_068922_010 Hb_005271_020--Hb_068922_010 Hb_024505_020 Hb_024505_020 Hb_005271_020--Hb_024505_020 Hb_030429_010 Hb_030429_010 Hb_001999_150--Hb_030429_010 Hb_000414_070 Hb_000414_070 Hb_001999_150--Hb_000414_070 Hb_005862_030 Hb_005862_030 Hb_001999_150--Hb_005862_030 Hb_002539_080 Hb_002539_080 Hb_001999_150--Hb_002539_080 Hb_002735_060 Hb_002735_060 Hb_001999_150--Hb_002735_060 Hb_002681_110 Hb_002681_110 Hb_001999_150--Hb_002681_110 Hb_001502_070 Hb_001502_070 Hb_001421_020--Hb_001502_070 Hb_001221_410 Hb_001221_410 Hb_001421_020--Hb_001221_410 Hb_001143_170 Hb_001143_170 Hb_001421_020--Hb_001143_170 Hb_001421_020--Hb_000465_040 Hb_002107_130 Hb_002107_130 Hb_001421_020--Hb_002107_130 Hb_000723_090 Hb_000723_090 Hb_001421_020--Hb_000723_090 Hb_000457_110 Hb_000457_110 Hb_000465_040--Hb_000457_110 Hb_000465_040--Hb_000723_090 Hb_116420_030 Hb_116420_030 Hb_000465_040--Hb_116420_030 Hb_002105_090 Hb_002105_090 Hb_000465_040--Hb_002105_090 Hb_000714_030 Hb_000714_030 Hb_000465_040--Hb_000714_030 Hb_000084_290 Hb_000084_290 Hb_000465_040--Hb_000084_290 Hb_001246_090 Hb_001246_090 Hb_000424_250--Hb_001246_090 Hb_001184_090 Hb_001184_090 Hb_000424_250--Hb_001184_090 Hb_000576_010 Hb_000576_010 Hb_000424_250--Hb_000576_010 Hb_007576_040 Hb_007576_040 Hb_000424_250--Hb_007576_040 Hb_000494_020 Hb_000494_020 Hb_000424_250--Hb_000494_020 Hb_032264_110 Hb_032264_110 Hb_000424_250--Hb_032264_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167017 0.048394 0.441111 0.733869 1.15157 0.729919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.987083 0.603301 0.44838 0.0709354 0

CAGE analysis